Pleurodeles waltl (Iberian ribbed newt): 138261609
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Entry
138261609 CDS
T10800
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138261609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138261609
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138261609
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
138261609
NCBI-ProteinID:
XP_069066824
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Position
2_1:98471748..98673127
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AA seq
596 aa
AA seq
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MEGPAVSCAWVIPAHAQFAPPGPCHWLSVAWEGSMLQAHRKDDPTAKRGEGPMSRRAEST
PVLQDVPQEIKINRSNDTKVLPTAPQSDEEDSDSDSDDDDVKVTIGNIKTGAASYMATNF
KTGRGYGGSISAKFQPKGIDLDAPGNINGLPVIEVDLDSFEEKPWRKPGADISDYFNYGF
NEDTWKAYCEKQKRLQLGFDSTPPLSPENTVMDHQGRTGNADNEFENDNQSEFDSEYACL
AAGRSKAGPPPNRKLAGTIDVIGGQSGNIRRVEGRRRDKHPSEENAIQVLGDPKNNSQPM
QQSAPQLRPQLPPHHQQPPPQAPPPHLPFVTPTGPLTHRPPIVRLPPPHFMHPPPPVTNI
HPPLHPAGLPPPPSPMRGMYPPPLAPPPTLLIPTLDSQSSRYNNRHPPSFGYNSGDGGFV
SYPSVSTPHTSWVTTADKGTSNSNESHWQYTGARRDRERDRERDRERDRERDRERERERE
RERERPRTPPRTPPSHDHNRNDEERYHYYSRERSYEYDREYRKSRDHSKESDDRHRERKH
KEKEEPTKHKSSRRKTHETEEGETHRRHKHKKNKRNKEEKVESDGSPLRDERVFKE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggaaggccccgctgtttcctgcgcttgggtgattcctgcgcatgctcaattcgctccg
cctggtccctgccactggttgagtgttgcctgggagggatccatgctgcaggcgcatagg
aaagatgaccctactgctaaacgtggagaaggaccaatgtccaggcgagcagaatctacc
cctgtactgcaagatgtacctcaagaaatcaagatcaataggagtaatgacacaaaagtg
ctgccaacggcaccgcagagtgacgaggaagacagtgatagtgacagtgatgacgacgac
gtgaaggtcaccattggcaacatcaagacaggagcggcctcctacatggctacaaatttc
aaaactggcagagggtatggtgggtccatttcagccaagttccagccaaaaggcatagat
cttgatgcgcctggaaacataaacggattaccagtgatagaggtggatttggattcgttt
gaagaaaagccttggcggaagcctggagcggacatatcagactatttcaattatggattc
aatgaggacacgtggaaggcctattgtgagaaacagaagcggcttcagctgggatttgat
tctactccccctcttagcccagaaaatacagtaatggatcaccagggaagaacaggaaat
gcagataatgaatttgaaaatgacaaccagtctgaatttgattccgaatatgcttgtctt
gctgcaggccggtctaaggcggggcctccaccaaacaggaagctagctggaaccattgac
gtgattggagggcaatctggcaacatcaggcgggtagaaggaagacgcagagacaaacat
ccgtccgaggaaaatgcaattcaggttcttggtgacccaaaaaataattcacagccaatg
caacaatcggcacctcagctacgaccacagctacctccacatcaccaacagccaccacca
caggcacctcctccacatctgccttttgtgacgcctaccggtcctctaactcataggcca
ccgattgtccgattacctccgccgcattttatgcatcctcccccaccagtgactaacatt
catcctccgttgcatccggcaggtttaccaccaccccccagtcccatgcgaggcatgtac
ccgcctcctctagctccccctccgacgcttctcattccaacactggatagccagtcttcc
aggtacaacaacaggcatcctccatcttttggatacaactctggagatggtggttttgtc
agctacccctctgtctccacgcctcatacttcatgggtgactacagcagacaagggaaca
agtaactctaatgagagccattggcaatataccggagccaggcgagaccgagagagagac
cgagagagagacagagaaagagaccgggagagagacagagagagagagcgggaaagagag
cgggaaagagaacgcccaagaactccacccagaactccaccaagccatgatcacaacagg
aatgatgaagagcgataccattactatagtagggagagaagttatgaatatgaccgagag
taccgaaaaagtcgagaccacagcaaggaaagtgatgaccggcaccgggagcgtaaacac
aaagagaaagaagaacccactaaacacaaatcatcaaggcgcaaaacacacgagactgaa
gaaggtgaaacacaccggcgtcacaagcacaaaaagaacaaacgcaacaaggaagaaaaa
gttgagagtgatggcagtccccttagggatgagcgtgtcttcaaagagtga
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