Pleurodeles waltl (Iberian ribbed newt): 138261657
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Entry
138261657 CDS
T10800
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138261657 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwl03021
]
138261657 (SMARCC1)
03036 Chromosome and associated proteins [BR:
pwl03036
]
138261657 (SMARCC1)
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138261657 (SMARCC1)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138261657 (SMARCC1)
PBAF complex
138261657 (SMARCC1)
GBAF(ncBAF) complex
138261657 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
DUF919
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
138261657
NCBI-ProteinID:
XP_069066969
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All DBs
Position
10:498546540..499391884
Genome browser
AA seq
1188 aa
AA seq
DB search
MKQRQPGLVPPGSGCNGSSESGARQPGGARRRRRRRGGAREPDEPEESSSPAARAPEQEA
AQPGEDDEEEDGETSPAVLGEEEDEEEEDEVDEEEDEESGSPPEDNPLAPPAPPAAARKK
DGGPSTKHWESPDTLALLEPVRAWLGKHYKKYVQADAPTSKALAGLVVQLLQFQEDAFGR
HVTNPAFTKLPAKCFMDFKGAGPLSHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMN
IEKTLVQNNCLTRPNIYLIPDIELKLLNKLKDIIKRHQGTITEEKSKASHHVYPLPTTPE
DDEWLRPVMKRDKQVLVHWGFSPDSYDTWVPSTDIDAELEDPPPPEKPWKVHARWILDTD
VFNEWMNEEDYEVDDNKKPVSSRQRISMKNEEPARSPERKDRRTSGSAKKRKRSPSPPPT
PTECKRKSAKKGQGALYGKRRGVKEEDEQDDLTKDMEDPTPVPNIEEVVLPKNVNPKKDS
EHTPVKGGVVADLDEQEEETVPASGKEDEDPNKGDQSRSVDSGEDNVTEQTNHIIIPSYA
SWFDYNCIHVIERRALPEFFNGKNKSKSPEIYLAYRNFIIDTYRLNPQEYLTSTACRRNL
TGDVCAVMRVHAFLEQWGLVNYQVDVESRPMAMGPPPTPHFNVLADTPSGLVPLHLRTPQ
TPASQQMLNFPEKNKDKPTDLQNFGLRTDIYSKKTLAKSKAASAGREWMEQETLLLLEAL
EMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSSLGPLAYQPVPFSQSGNPV
MSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAAKVFGKVDPSY
GLESSCIAGTGADEMEKLEKPAEVVQEKMETDTPDDQPQERTEIKGERDTQTDCAERAMD
GANENRTEKEEGEMSESKTDEASEENKENIDLEKAKEIEILKRREQDISEGNVATAAAAA
LASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQ
QLLTERQNFHMEQLKYAEMRARQQLEQQHGQNLPPPSAAGGPGPASQGSTSMPGLSAPQH
PPPYPLHHPMPPPPVSQATGPAAGPASVITASPGPTRIMPNVSSNMPPAGGPPPPASGLP
PSSNTIIGPRVPLAPNGMYPQPSQQQQQPPHPPQTESATPPPATPAVP
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaggcaacccggactggtgccgccaggcagcggatgcaacggcagcagcgag
agcggcgcgaggcaaccggggggtgcgcggcggaggcggcgtaggcgagggggcgcacgg
gagcctgacgaaccggaggagagcagcagcccagctgcccgggcccccgagcaggaggcc
gcccagccaggcgaagacgatgaagaggaagatggtgagactagccctgcagttcttggg
gaagaggaggacgaagaagaggaggatgaggtagatgaggaggaagacgaggaatctgga
tcaccgcccgaagataaccccttggcgcctcccgcgccccctgcagctgcccgcaagaag
gacgggggtcccagcaccaagcactgggagagccctgatactctggcactcttggagcct
gtacgggcctggctgggcaagcactataagaagtatgtccaagcagatgctcccaccagt
aaagcattggcagggcttgtggtacaacttctgcagttccaggaggatgcctttggaaga
catgttacgaaccctgccttcaccaagcttcctgcaaagtgttttatggatttcaagggt
gctggacctctgtctcatattcttggagctgcttacaagtacaagaatgagcaaggctgg
cgcaggtttgaccttcagaatccttccagaatggatcgcaatgtggaaatgtttatgaac
atagagaaaacactagtgcagaacaactgtctgactcgaccaaatatctacctcattcct
gacattgaattgaaattactcaataaactaaaggacattatcaaacgtcatcagggaacg
atcacagaagagaagtctaaagcttcacaccacgtttacccacttccaactactcctgaa
gatgatgaatggttgcgacctgtgatgaagagggataagcaagtgttggtgcattggggc
ttctcaccagacagttacgacacatgggtgccatctactgatattgatgccgaattggaa
gatccacctcccccagagaaaccgtggaaggttcatgcaaggtggattttagacactgat
gttttcaatgagtggatgaatgaagaggattatgaagtggatgacaacaagaagccagtt
agctctcggcaacgaatctctatgaagaatgaagagcccgcccgtagtcctgaaaggaag
gaccgaaggacatctggaagtgcaaagaagagaaaacgttcaccctctccaccacccaca
cctactgagtgcaagagaaagagtgccaaaaaaggtcaaggtgcgctctatggaaagaga
cgaggggtgaaagaagaagatgagcaagatgatcttaccaaggatatggaggatccaaca
ccggtgcccaacatcgaagaagtggtacttcctaaaaacgtgaacccaaagaaagatagt
gagcacactccagtcaaagggggcgtggtggctgatctagatgagcaggaagaagaaact
gtgcctgcaagtggaaaagaggatgaggatcctaacaaaggtgatcaaagcagatcagtt
gattcgggggaggataatgttacagaacagaccaaccatataataattccaagttatgcc
tcctggtttgattacaactgtattcatgtgatagaacgccgtgctcttccagagtttttc
aatgggaaaaataaatccaagtctcctgaaatataccttgcttatcgtaacttcatcatt
gacacttaccgactgaaccctcaagagtatttaaccagcacagcctgcaggaggaattta
acaggcgatgtgtgtgctgttatgagagtgcatgccttcttggagcagtggggtcttgtt
aattaccaagtggatgtagagagcagacccatggccatgggcccaccacctactcctcat
ttcaatgtgcttgctgatactccctctggacttgtaccacttcatctccgaactcctcag
actcctgcttcacaacagatgttaaatttcccagagaaaaacaaggacaagcctactgat
ctgcaaaactttggtctgcgcacagacatatactcaaaaaagacattagcaaagagtaaa
gcagccagtgctgggagggagtggatggagcaggaaactttgcttttgctagaggcactt
gaaatgtacaaggatgactggaataaggtgtctgagcatgtgggaagccgcactcaggac
gagtgcatcctgcactttctcaggcttcctatcgaagacccctaccttgagaattcggac
tcttcactcggccctcttgcttatcagcctgtgccattcagtcagtctgggaatccggtc
atgagcacagttgccttcttggcatctgtggttgatccccgggtggcgtcggcagctgcc
aaagcagctctagaggagttctcccgtgttcgtgaggaagtacccctggaacttgtcgaa
gcacacgtcaaaaaagtgcaggaggccgcaaaagtctttggaaaagtggatccctcatat
ggcttggagagcagctgcattgctgggactggggcagatgaaatggaaaagctagaaaaa
ccagctgaagtggttcaagagaaaatggagactgacactccagatgatcagccacaagag
aggactgaaattaaaggggaaagagatacccaaacggattgcgctgaaagagcaatggat
ggagcaaatgaaaaccgtacagagaaggaagagggagaaatgtctgaaagtaaaacagat
gaagcatcagaggagaataaagagaatatagacttggaaaaagcaaaggaaattgaaatt
ttgaagaggagagaacaggatatctcagagggaaatgttgcaactgctgcagcagccgca
ctggcctcagccgcaaccaaagccaagcatctcgctgcggtagaagagaggaagattaaa
tcactggtggctctcctggtagagactcagatgaagaaactagagattaagctgcgccat
tttgaagagctagaaaccatcatggacagagagaaagaggcgttagaacagcagaggcag
cagcttctgaccgagcgtcagaattttcacatggagcaactgaagtatgctgaaatgagg
gctcggcagcagttggagcagcagcatggtcaaaatcttccaccgccgagtgctgcaggt
gggcctggcccagcttcccagggatccactagtatgccagggctgtctgctccacagcat
ccacctccgtaccctttgcatcaccccatgccgccacctcctgtatcccaggctacaggt
cctgctgccggtcctgcatcagtcattactgcttcaccaggacctacgcgcataatgcca
aatgtttcttcgaatatgccaccagctggtggcccaccacctccagcatcaggtctgcca
ccctcatctaatactattattggaccacgtgtaccattggcacccaatggcatgtatcct
caaccttcacaacagcagcagcaaccaccacatcctcctcagaccgaaagtgctacaccc
cctcccgcgacaccagcagttccatga
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