Pleurodeles waltl (Iberian ribbed newt): 138261934
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Entry
138261934 CDS
T10800
Symbol
EXOSC7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138261934 (EXOSC7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138261934 (EXOSC7)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
138261934 (EXOSC7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
138261934 (EXOSC7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
138261934
NCBI-ProteinID:
XP_069067618
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All DBs
Position
10:complement(838768358..838839095)
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AA seq
291 aa
AA seq
DB search
MASVTLSEAEKVYIAHGIQEDLRVDGRGCEDYRCIEVETDVVSNTSGSARVKLGHTDILV
GVKAEMAIPKHERPYEGYLEFFVDCSANATPEFEGRGGEELGTEISNTLFRIFNSNSCLD
LKSLCIHPGEHCWVLYVDVLLLECDGNLFDAISIAAKAALFNTRIPKVRVLEDEEGSKEI
ELSDDPFDCIQLNVENVPCIITVTKIGHRHVVDATVQEEACSLASLLISVTSKGVLTCVR
KVGTGSLDPESIFEMIETGKRVGKSLHVSLQDALNKEESMGKKRLKVGFLR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggtgactctgagcgaggccgagaaggtttatattgcccatggaattcaggag
gatctgcgtgtggatggtagaggatgtgaagactataggtgcattgaggtggaaactgat
gtggtatcaaacacaagtggatcggcaagagtgaagcttggccatacagacatattggtg
ggtgttaaagcagagatggccattccaaaacatgagagaccatatgaaggttatttggag
ttttttgtggattgctctgcaaatgccacaccagaatttgaaggtcggggaggagaagaa
cttggcactgagatatcaaatacattattccgaatatttaacagtaatagctgtcttgat
ctgaaatccctctgtattcatccaggagagcattgctgggttctttatgtagatgttttg
ttgttggagtgtgatggaaacctctttgatgcgatctctattgctgccaaggctgcttta
tttaatacaaggattcccaaggtaagagttctagaagatgaagaaggttccaaggagatt
gaactctctgatgatccatttgattgtatacaacttaatgtggaaaacgtaccatgtatc
atcactgtaaccaaaattggtcataggcacgtggtggatgctaccgtgcaggaggaagcc
tgctccttggcaagtcttcttatatctgtgaccagtaaaggtgttctcacttgtgtaagg
aaagtaggaacaggcagcctcgatccagaaagcatctttgagatgattgagacgggaaag
cgagttggcaagtctttacatgtatccttgcaagatgctttgaataaggaagaaagtatg
gggaaaaaacgacttaaagttgggtttctgagatga
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