Pleurodeles waltl (Iberian ribbed newt): 138262062
Help
Entry
138262062 CDS
T10800
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04518
Integrin signaling
pwl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138262062 (COL1A2)
04518 Integrin signaling
138262062 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138262062 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138262062 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138262062 (COL1A2)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138262062 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
138262062
NCBI-ProteinID:
XP_069067861
LinkDB
All DBs
Position
10:complement(949503124..949560546)
Genome browser
AA seq
1273 aa
AA seq
DB search
MGLMGPRGPPGPSGPPGAQGFQGIPGEPGEPGQTGPVGGRGPTGPPGKSGEDGNPGKPGR
PGERGPGGAQGARGFPGTPGLPGFKGIRGHNGFDGVKGAPGNAGTKGENGAHGENGSPGQ
AGARGLPGERGRIGGPGPVGARGSDGSAGPGGPSGPIGSAGAPGLPGAPGVKGEIGSAGS
TGPSGPAGSRGDPGLPGSVGPVGPAGNPGANGVAGAKGAAGLPGVGGAPGLPGPRGIPGP
QGAAGATGARGLAGDPGTSGGKGDTGSKGEPGSAGPQGNAGPSGEEGKRGPNGEPGSSGP
AGSAGIRGVPGTRGLPGADGRAGGMGAPGSRGSSGPAGARGPSGDAGRPGEPGLLGARGI
PGFPGNTGPAGKEGPAGPQGIEGRSGPAGPTGARGEPGSIGFPGPKGPAGEPGKNGDKGS
PGPSGARGAPGNDGNNGAQGPAGVLGNAGEKGEQGPAGAPGFQGLPGPGGPAGEVGKPGD
RGIHGDHGPAGPAGVRGERGAPGESGSVGPVGPVGSRGPSGPPGPDGTKGEPGLAGLAGG
VGPSGSGGIPGERGGAGTPGVKGEKGEPGNRGEYGNQGRDGARGPAGASGAPGPSGGPGD
RGESGPSGPAGPAGSRGAPGERGEPGPGGPTGFGGPPGAAGHTGVKGERGEKGPKGEGGP
QGPVGAAGSSGPAGPNGPAGAPGARGDAGPAGATGFPGAAGRPGAPGPAGMAGPPGPTGH
AGKDGPRGPRGDSGPVGRPGEQGVGGPQGISGEKGPSGDSGPPGLPGSSGPSGVLGSRGI
LGLPGTRGERGLPGGPGANGEPGSAGPAGPAGSRGAPGPVGSAGMNGSPGEAGRDGNPGN
DGPPGRDGLAGAKGERGYPGNSGSLGHAGAPGPHGSVGPAGRAGNRGEPGSAGSQGSVGP
AGPRGPAGAQGVRGDKGEAGEKGARGLDGRKGHNGLQGLPGLPGSPGESGIAGPSGPSGP
RGPAGPSGPPGKDGRSGHPGAIGPVGVRGSPGHQGPAGPAGSPGAPGPAGPSGGGYDAGY
DGGEFYRADQPSLRPKDYEVDSTLKTLNSQIETLLTPEGSKKNPARTCRDLRLSHPDWSS
GFYWIDPNQGCIADAIRVYCDFSSGETCIHANPDSISPKTSYLNKNPKDKKHVWLGEIMN
GGTQFEYNEEGVTSKDMATQFAFMRLLANHASQNITYHCKNSIAYMDGETGNLKKAVMLQ
GSSDVELRAEGNSRFTFSVLEDSCTKHTGEWGRTVIEYRTNKPSRLPILDIAPMDIGGAE
QEIRVDIGPVCFK
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgatgggaccccgaggtcctccaggaccatccggacctcctggtgctcaagga
tttcagggcattcctggtgagcctggcgaacctggtcagactggtcctgtgggtggccga
ggtccaactggtccacctggaaagtctggtgaagatggcaaccctggaaaacctggcaga
cctggtgagagaggtcctggtggtgctcagggtgcccgtggttttcctggaacacctggc
cttcctggatttaaaggaatcaggggccacaacggttttgatggtgtcaaaggagctcct
ggcaatgctggtactaagggagaaaatggtgcccatggtgaaaatggctctccaggtcaa
gctggtgcccgtggcctaccaggagagagggggcgtataggaggccctggaccagttgga
gctcggggaagtgatggcagtgcaggtccaggtggcccatctggccctattggttccgct
ggtgctccaggccttccaggggcccctggtgtcaagggtgaaattggttctgctggaagc
actggtccttctggtcctgctggttctagaggagatcctggcctccctggctctgttggc
cctgttggacctgctggtaatcctggtgctaatggtgtagctggagcaaaaggtgccgct
ggccttcctggtgtgggtggtgctcctggtttgcctggtccacgtggtattcctggcccc
cagggggcagctggtgctactggtgccaggggccttgctggtgacccaggaacttctggt
ggaaagggagacactggctccaagggtgaacctggttctgctggtccccaaggtaatgct
ggaccatctggagaagaaggcaaaagaggtccaaatggtgaacctggatcctctggccct
gcaggctctgcaggcataaggggtgttcctggaactcgtggtctccctggtgctgatggc
agagctggtggaatgggcgctcctggaagtcgcggttcttctggtcctgctggtgctcgt
ggtccttcaggtgatgcaggacgccctggcgagcctggtctcttgggagcaaggggaatt
cctggtttccctggaaatacaggccctgcaggcaaagaaggtcccgctggtccacaaggc
attgaaggtcgttcgggtcctgctggtccaactggtgctagaggcgagcctggcagcata
ggattccctggcccaaaaggcccagctggtgagcctggcaagaatggtgacaagggtagc
cctggaccttccggtgcaaggggagctcctggtaatgatggaaacaatggtgcccaaggt
ccagctggtgttctgggaaatgctggtgagaaaggtgaacaaggcccagctggagctcct
ggttttcagggtctgcctggtcccggaggtcctgctggagaagttggcaaacctggagac
aggggaatacatggtgaccatggtcctgctggtcctgctggcgtgcgaggtgagcgtggt
gctccaggcgaaagtggctctgttggacctgtcggccctgttggatcgcgtggtccatct
ggtccccctggccctgatggtactaagggtgaacctggtcttgctggtttagctggtggt
gttggcccatctggctctggtggaattcccggagaaagaggtggtgctggaacacctggt
gtcaaaggagaaaagggtgaacccggaaaccgaggtgaatacggaaaccaaggaagagat
ggagcacgtggccctgctggtgcttctggtgctcctggtccatctggaggtcccggtgac
aggggtgaatctggtccttctggccctgctggtcctgcaggctctcgaggagcacctggt
gaacgtggtgaacctggccctggtggccccactggctttggcggtcctcctggtgccgct
ggacacactggagtgaaaggagaaagaggcgaaaaaggacctaaaggtgaaggtggccca
cagggtcctgttggtgcagctggttctagtggtcctgcaggtcccaatggtcctgctgga
gctcctggtgctcgtggtgatgctggtccagctggtgctacaggattccctggagctgct
ggaagacctggtgcacctggccctgcaggtatggctggcccacctggcccaactggtcat
gctggcaaagatggcccaagaggtccacgcggtgattcaggcccagtgggtcgtcccggt
gaacaaggtgttggtggtccccaaggtatctctggtgaaaagggtccttctggtgattct
gggcctcctggtcttcctggtagttcaggtccatctggtgtcttgggttctcgtggtatt
cttggtcttcctggtaccagaggtgaacgtggtcttcctggtggtcctggagcgaatgga
gagcctggttctgctggacctgccggtcctgctggctcccgtggtgcccctggtcctgtt
gggtctgctggtatgaatggttctcctggtgaagctggtcgcgatggcaaccctgggaac
gatggtcctccaggccgtgacgggctcgctggtgccaagggtgagcgtggttatcctggc
aactcaggaagtcttggccatgctggtgctcctggaccccatggctctgtcggccccgct
ggcagggctggaaaccgtggagagcctggctcagctggatctcaaggctctgttggtcct
gctggaccaagaggacctgctggcgctcaaggtgtccgaggtgacaagggtgaagctgga
gaaaagggagcccgcggtctggatggtcgcaaaggtcacaatggattacagggtctgcct
ggtctcccaggttcacccggagaatcaggtattgctggtccaagtggtccctctggccca
aggggtcctgccggcccatctggccctccaggaaaagatggtcgctcaggacatcctgga
gcaattggccccgttggtgttcgtggctctcctggacatcaaggccctgctggtcccgct
ggatcccctggtgcccctggccctgctggaccttctggaggtggctatgatgccggttat
gatggtggtgaattttatagagctgaccagccttctctcagacccaaggactatgaagtt
gactccacactgaaaactttgaacagccagattgagacactgttgaccccagaaggctca
aagaagaatccagctcgcacatgccgtgacttacgactcagtcacccagactggtcaagt
ggcttctactggattgatcctaaccagggttgcattgctgatgccatcagagtgtactgt
gacttttccagcggggaaacatgcatccatgccaacccagatagcatttcacccaagacc
tcgtacttgaacaagaaccccaaggataagaagcatgtatggcttggagaaatcatgaat
ggtggtacccaatttgagtacaatgaagaaggtgtgacctctaaagatatggctactcag
tttgcattcatgcgtctcctggccaaccacgcctctcagaacattacctaccactgcaag
aacagcattgcatacatggatggagagaccggtaacctaaagaaggctgtcatgctgcaa
ggatctagtgatgttgaactccgcgctgagggcaacagcagattcaccttcagtgtcctc
gaggacagctgcactaaacatactggtgaatggggcagaacggtcattgaatacagaaca
aacaaaccatcccgcttgcccatcttggatattgcacctatggacattggtggtgctgaa
caagaaatccgtgtggacattggacctgtctgtttcaaatga
DBGET
integrated database retrieval system
