Pleurodeles waltl (Iberian ribbed newt): 138265404
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Entry
138265404 CDS
T10800
Symbol
FXR1
Name
(RefSeq) RNA-binding protein FXR1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138265404 (FXR1)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138265404 (FXR1)
Factors involved in mRNA localization
Other mRNA localization factors
138265404 (FXR1)
mRNA cycle factors
Stress granule specific factors
138265404 (FXR1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
FXR_C3
KH_1
Agenet
KH-I_KHDC4-BBP
Tudor_2
Motif
Other DBs
NCBI-GeneID:
138265404
NCBI-ProteinID:
XP_069069194
LinkDB
All DBs
Position
11:71978266..72252463
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AA seq
677 aa
AA seq
DB search
MEELTVEVRGSNGAYYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEII
EGEEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKP
VSQNSFFKCTVDVPEDLREACSNESAHKDFKKAVGACRIYFHAESNQLVILSGSEATVKR
VNILSDMHLRSIRTKIMLMSRNEEATKHLECTKQLAAAFHEEFTVREDLMGLAIGTHGIT
IQQARKVPGVTAIELDEDTGTFRIYGESAEAVKKARSYLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMAFRPPSSRGTEKEKGYMTDESTVSSVRGGRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKDELSDWSLAGEDERESRYPQDSRRRPGPRGRSGSG
VQGRGGSRGGKSSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHLTTTRRRRSRRRR
TDEDSALIDGMTESDTASVNENGLDDSEIKPQRRNRSRRRRFRGQAEDRQPVTVADYISR
AESQSRESNLPKESLAKNKREMANVIEEHVPSEKSLNGPSVTSVDTSEPQSSTQERNISP
SLQEDGRNQEAIVNGVS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaggaactaactgtggaagtgcgcggctccaacggagcctactacaagggattcatc
aaagacgtacatgaggattcacttacagtagtttttgaaaacaactggcaaccagaacga
caggttccatttaatgaagtcagattaccgccgcctcctgatataaaaaaagaaattatt
gaaggagaggaagtagaggtatactccagagcaaatgaccaggagccatgtggatggtgg
ctggccaaagttcgaatgatgaaaggcgagttctacgtcattgagtatgctgcttgtgat
gcaacttacaatgaaatagttacgtttgaacgacttcggcctgtcaatcaaaataagcct
gtatcacagaactctttttttaaatgtacggtggatgtccctgaagatttaagagaagca
tgctcaaatgaaagtgcacacaaagacttcaaaaaagctgtgggagcatgccgaatttat
ttccatgcggagtcgaatcagttagttatactgtctggcagtgaagcaacagtgaagaga
gtgaacatattaagtgatatgcacttacggagtattcgcacaaaaatcatgcttatgtca
agaaatgaggaagcgaccaagcatttagagtgcaccaaacaacttgcagcagcatttcac
gaggagtttacagttcgagaagatctaatgggcctggcaatagggacacatggtatcact
attcagcaggctagaaaggttcctggagtgactgcaatcgaactggatgaggatactggt
acatttcgcatctatggtgagagtgcagaagcagtaaaaaaagctagaagctatttggaa
tttgtggaggatttcattcaggtccctcgaaaccttgtaggtaaagtgattggaaagaac
ggaaaagtgattcaagaaattgtggacaaatctggagtcgttagggtgagaattgaagga
gacaatgaaaacaaactacccagggaagatggaatggttccctttgtatttgttggcact
aaggaaagcattggaaacgtgcaggtccttttagaataccacattgcttacttaaaggaa
gttgagcaattaaggatggaaaggttgcagatagatgaacagttgcgccagattggtatg
gctttcagaccaccttccagccgaggaactgaaaaagaaaaaggttatatgactgacgaa
agcaccgtttcctctgttcgtggcggcagatcatatagcggaagaggtcgaggtcgaagg
ggccccaactacacatctggttatggtacaaactcggagctgtctaacccctctgaaact
gaatctgaaagaaaagatgaactcagtgattggtcacttgcaggagaagacgagcgagaa
agtagatacccacaagatagcagaagacgcccaggaccaagagggagaagtggctctggg
gttcaagggcgtggtgggtcccgaggtggcaagtcatcatctatcagctctgtgctaaag
gacccagacagcaacccttatagccttcttgataacacagaatcagaccagacggctgac
acagatgcaagtgaatctcatctgaccactacccgtcgccgacggtcgcgcaggaggaga
actgatgaagactctgctctcattgatggaatgacagaatctgatacagcttctgttaat
gagaatgggttagatgatagtgaaattaaaccccagcgacgcaatcgtagccgcaggcgt
cgcttcaggggtcaggcagaagatagacagccagttactgtggcagactacatatcaaga
gctgaatctcaaagtagggaaagcaacctgcctaaagagtcactagcaaaaaacaagagg
gaaatggcaaatgtgatcgaagaacatgttccatctgaaaagtcattaaatggcccatcg
gttacttctgttgatacttcagaaccacagtcgagtacacaagaaagaaatatttcacct
tcccttcaagaagatggacgcaatcaagaagccatagttaatggtgtttcataa
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