Pleurodeles waltl (Iberian ribbed newt): 138267044
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Entry
138267044 CDS
T10800
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013
Nucleocytoplasmic transport
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138267044 (UPF1)
03015 mRNA surveillance pathway
138267044 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138267044 (UPF1)
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138267044 (UPF1)
5.6.2.5 RNA 5'-3' helicase
138267044 (UPF1)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138267044 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
138267044 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_11
AAA_12
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
nSTAND3
NAT10_TcmA_helicase
DEAD
ATPase
SRP54
UvrD-helicase
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
138267044
NCBI-ProteinID:
XP_069071992
LinkDB
All DBs
Position
12:56764591..57257994
Genome browser
AA seq
1339 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPGQSQNQLDGQVNG
PDGVLQNGAVDDVAKTSQLLAELNFEEDEEDTYYTKDLPTHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRPSRGYLRGLQILPVEEDSKTEEREGWKWRREAL
NVSMWRKRLCSPQSPSEGPILSRSQRRTYRSRQDSTNNFGTEKGHAIETFGFEPKHRPRN
TVPSSQSLKSLSELMPTSTHGLSIPRKPASELKRPIYTEEHGLSKQLKESHRFSEELAQM
EEIDKRQDRIHIHKDTGGKILTAPPLKTRTVAFQGQLDTDQPPAKVPRPKQKTPPPQFSP
HQSPPHSPHRTVSPPTTHTPAQSPVHSADSQHDNVDPWDLYDPDPISDYSPDCYPSIPSP
PEASTAYTQVLARAASYHNEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISSGPSHVAAMN
IPIPFNLVMPPMPPPGYFGQANGPAAGRGVPKGKTGRGGRQKNRGMGIQGMNQSNMPNSQ
ASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDS
TYQGERAYQHGGVTGLSQY
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcgtacggacccagctctcagaccctcaccttcctggacaccgaggag
gccgagctgctgggcgcagacacccagggctccgagttcgagttcaccgacttcaccctg
cccagccagacccagactccggggcagagccagaaccagctggacggacaggttaatgga
cctgatggcgttttgcagaatggtgctgttgatgatgttgcaaagactagccaactgcta
gcagagctgaattttgaagaagatgaagaagatacctattatacaaaagaccttccaact
catgcttgcagctactgtggaatccatgaccctgcctgtgttgtgtactgcaatactagc
aagaaatggttctgcaatggtcgtggaaatacttctggaagtcacattgtgaatcacctt
gtgagagcaaagtgcaaggaggtgactcttcataaggacgggcctctgggagagactgtt
ttggagtgctacaactgcggatgtcgcaatgtgttcctgcttggatttattcctgccaag
gccgactctgtggttgttctgttgtgtaggcaaccatgtgccagtcaaagcagcttgaaa
gatattaactgggacagttcccagtggcagccccttattcaggatcgctgctttctttca
tggttggtgaagattccttcagaacaggaacaattaagagcacgtcagattacagctcag
caaattaacaaattggaagagctttggaaggaaaacccatctgcaacccttgaggacttg
gagaaaccgggtgttgatgaggaacctcagcatgtacttctccgatatgaggatgcttat
cagtaccaaaatatctttggacctttagtcaaactggaggcggattatgacaaaaaattg
aaggagtcacagacccaagataacattactgtgagatgggaccttggcttaaacaagaag
agaattgcctatttcaccttgccaaaaacagactccgatatgcggcttatgcaaggtgat
gagatctgcctgcgctacaaaggagatttggcacctctgtggaaaggaatcggccatgtt
atcaaagttcctgataattatggtgatgaaattgctatcgagttaaggagtagtgttggt
gcacctgtggaggttacccacaattttcaagttgattttgtttggaaatctacttcattt
gacagaatgcagagtgctttgaaaacatttgctgtggatgagacatctgtgtctggttac
atttaccacaaattgttggggcatgaagtggaggatgtaattattaaatgccagttgcca
aaacgcttcacagcgcagggtctccccgacctcaatcattctcaggtttatgctgtaaag
actgtattacagcgtcctcttagccttatccaaggtcctcctggtacaggaaaaactgtg
acatctgcaacaattgtataccacctggcacgccaaggcaatggacctgtgctggtttgt
gctccaagtaacatagctgtggatcaactgactgagaagatccaccaaactggactgaaa
gtggttcgtctttgtgcgaagagtcgtgaagccattgactctcctgtatcttttctggca
ttacacaatcaaattcggaacatggacagcatgcctgagcttcagaaattgcaacagttg
aaagatgaaactggagagctgtcttctgctgatgagaaacgttatcgtgctttgaagaga
actgcggaacgtgaattgcttatgaatgctgatgtaatttgctgcacatgtgtgggagcc
ggtgatcctagacttgcaaaaatgcagtttcggtcaattttgattgatgaaagtacacaa
gctactgagcctgaatgtatggttccagttgttcttggagctaaacagctgatcctggta
ggtgatcactgccaacttggtcctgttgtgatgtgtaagaaagcagcaaaggctggactt
tctcagtccctctttgaaaggcttgttgtcttgggaatccgcccaattcgtcttcaagtt
cagtatcgcatgcatcctgcacttagtgcattcccatcaaacattttctatgaaggatct
cttcagaatggagtcactgcagctgatcgtgtgaaaaaaggatttgatttccagtggcca
cagccagacaaaccgatgttcttttatgtcactcaggggcaagaggaaattgcaagttca
ggcacctcttatttaaacagaccatcgagaggatacttgcgaggactgcagatccttccg
gtcgaagaagactctaaaacagaagagcgtgaaggttggaaatggcgtagagaagcactg
aacgtctcgatgtggaggaagagattatgctcaccgcagtctccgtccgagggtccgatt
ctgagcaggagtcagaggcggacataccggtcacggcaggacagcacaaacaacttcggc
accgagaaaggccacgccatcgaaaccttcggattcgagccgaagcacaggccccgaaac
accgtcccatcgagtcaaagcctcaaatccctttcagagctgatgccaacatccactcac
ggcctttcgatcccaagaaaaccggcttcggagctgaaaagacccatctacacagaggag
catggactttcaaaacaacttaaagaaagccataggttttcggaggaacttgcacaaatg
gaggaaattgataaaaggcaggacagaattcatattcataaagacactggcggcaagatt
cttactgcacctcctctaaagactaggacggtagcctttcaaggacaattggacactgat
cagccaccagctaaagtgccaaggcctaagcaaaaaactccacctccacaattttcacct
catcagtctcctcctcattcccctcaccggactgtctctccacctactactcatacacct
gcacagtctccagtacactctgcagattcacaacacgacaatgtcgacccatgggatctc
tatgatccagatcccatttccgattatagcccagactgctatccttccataccatcacca
ccagaagctagcactgcatacactcaggttctggctagggcggcatcataccacaacgaa
gtggaaattgcaagtgtggatgctttccaaggacgagagaaggactttatcatcctttca
tgtgtaagagccaatgagcaccaggggattggatttttaaatgatcctcgacgtctgaat
gtagccctcaccagagcaagatatggagtaatcattgttggaaatccgaaagctttgtct
aaacagcctctttggaatcatcttctaaattactacaaagagcagaaggtattggttgaa
gggccactaaacaaccttcgagaaagcctcatgcagttcagcaagcctcgtaaacttgtt
aatacaataaatccaggtgcccgatttatgacgacagccatgtatgatgcccgtgaagca
attatccctggttcagtgtatgacagaagcagtcagggaaggccatcaaatatgtacttc
caaactcatgatcagattggcatgatcagttctgggccaagccatgtggctgctatgaac
attcctattccgttcaatcttgtgatgccaccaatgccacccccgggatactttggccag
gcgaatggtccagctgcaggtcgtggtgtgcccaaaggaaaaactggtcgaggtggacgg
caaaaaaatcgtggcatgggtattcaaggaatgaaccagtcaaacatgccgaacagccag
gctagtcaagatgttgtgtcccagccattttcacagggtccattgactcagggctatatt
tcaatgagtcagccatctcaaatgagccaacctggtctttctcaaccagaattgtcacag
gacagttaccttggagatgagtttaagtcccagattgatgtggcgctgtcgcaagactcc
acttaccagggtgaacgggcgtatcaacatggtggtgtgacagggctgtcacaatactag
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integrated database retrieval system
