Pleurodeles waltl (Iberian ribbed newt): 138267422
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Entry
138267422 CDS
T10800
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pwl03036
]
138267422 (CHD9)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
138267422 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
138267422
NCBI-ProteinID:
XP_069072447
LinkDB
All DBs
Position
12:complement(306692250..308321402)
Genome browser
AA seq
2896 aa
AA seq
DB search
MTDPMMDFFDDAQLFGETLEGLSDDAFVQPVSVSLVDELNLGAEFEPLHVDSLNHVQESQ
THQKINDFEPLTTLESLKLHQPFSSSVENVLSPCSQFSCSPIHSQSQANGLFPDVTGGSP
MWGHQTAAPIDSQNGSPFNHQVHAPMQQNKGFVAHHDFSLFQPNDQSQPRASLQSQQNRN
VSNQGPETINQQTNFMEVSDSSPHRTHVNQQPHVANQSSPQRSHTVQQFTQTSGIPMHFI
GNHLGGPQDVRYDGLSPTMTPCSVGATPPFSSPYSFSSNHISSNNLLQPTTALDTNQPTH
PLADFTGSEAFVSGTKQDTTQHIVNADSPLNANTFQMFPPVHSQDNFSSSKLSSVNINYT
APVATATQISHFNEHIESNGFSSLEENLLHHVESQAESFTGLDTEDLLQDDLLPQFEDTA
YGPDSSDSGHAVLEPQDMEPNSSPQHTKLSSDVSQSQSQFHLWRSPSPNHHHLKDRNRFI
SQGKPPSIKKTDGSGTYSKLQNTQVKVTSERRQKKKVDTESKQEKANRIISEAIAKAKER
GERNIPRVMSPENFPSASVERRTEKRGRKMKSKPKDKECKKNKTGLSSKQKEKTKIGKLI
ITLGKKQKRKKESSDEMSDPEQAVQRTLKDEESQKRRSNRQVKRKKYAEEAEGKNSEEDT
KTSIKTKKSCTLLPAEQPLQLFVENPSEDDASIVDKIFSSRIVKKETSGILIEEEEFYVK
YKNYSYLHCEWATEQHLLKDKRIQQKIKRFKMKQAQRAHFFADMEEEFFNPDYTEVDRVL
EVSFCEDNDTGESVTYYLVKWCSLPYEDSTWELKEDVDQTKIDEFEQLQAYRPDPRHVDR
PLPNTWKKIDQSRDYNNGNELREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL
YEIFLTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVFHGSMISRQMIQQYEMYPRDFQ
GRIVRGAYKFHAIITTFEMILGGCQELSAVEWRCVIIDEAHRLKNKNCKLLEGLKLMNLE
HMVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMML
RRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMME
LRKCCNHPYLIKGAEEKIIGEFREMHGLGAPDFHLQAMVQSAGKLVLIDKLLPKMKAGGH
KVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDR
ASLKLGLDKAVLQSMSGRENSVGGIQQLSKKAIEDLLRRGAYGAIMDEEDEGSKFCEEDI
DQILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDFDAIHG
RNSLVIDTPRVRKQTRPFSATKDELAELSEAESEGEDKPKLRRPCDRSNGYGRTECFRVE
KNLLVYGWGRWRDILTHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITP
TEDGQTRELQNHLGLSAPVPRGRKGKKMKTQPSTFDIQKADWLRKYNPEHLLQDEGYKKH
LKHHCNKVLLRVRMLYYLKQEVIGNHYEKVFDGVDCSEIDVWVPEPDHAEVPVDWWDADA
DKSLLIGVFKHGYEKYNTIRADPSLCFMERVGKPDEKAVAAEQRANDYIDGDVEDPEYKP
APALFKDDMEDDALSPGDLVIAEGDCQGIEGDKTCWPTQSALTTRLRRLITAYQRNSKNR
QVKQIQQAFFLQASVSQTPCEEAVLNPKMAAKLERQQRWTRREEADFYRVVSTFGVVFDP
GRGRFDWTKFRAMARLHKKTDESLEKYLYAFMAMCRQVCRLPSKDLVGSNISIQPITEER
ASRTLYRIELLRKVREQALRHPMLSDRLKLCQPNLDLPIWWECGDHDKDLLLGAAKHGVS
RTDYHILLDPDLSFMMAQIKYNQNKVAQPRASTPLLQMALTSSPLTPQSKHQDTKGNAAE
DGKAKTENSKEEIQSSEEDHASTDQTGLVLKCEPVSPKSVILPQAAEQKFLSKTETNRRM
VAARTEPLTPNSASKKQRIHKRGSGSSSDSDSDSNRSSCSSRSSSSSSSSSSSCSQSRSG
SSSSSSSSCSSTSSSSSSSSSSSSSSSENSNSDDEETQKQADGNSHIKAFDEESVASLST
TQDETQDSFQMDNGTPNSNYLAQGGCALGNSYWPKDRVVINRLDSICQAILKGKWPSTRR
SYDNNNVASFYTTKLLDSPGAAADCSDSSTPTPGSICVKEERDQSPQMSKVKKHVREKEF
TVKLNDDGGLKLTFQKQGLIQKRTLESDEAEMEQQQYLARLKELQSASENSLVNFPKSLP
ASDTTSPLTGNVNGTILDSRPIIKKRRGRRKNVEGIDILFMNRNKAANHVSPGIINPILA
PSLKPTLACAPTQRLLDVESSVPVINLKDGTRLAGEDAPKRKDLEKWLQEHPGYVEDLGA
FIPKTQLHEGRPKQKRHRCRNPNKLDVNSLTGDERVQLINRRNARKVGGAFAPPLKDLCR
FLKENPEYGVAPEWGDVVKQSGYLPESMIDRILTGPVVREEVSRRGRRPKSEIAKANTAA
SAASATSITLNPLLANGMLPNVDLSALQALQQNLQSLQSLHLTAGLMGMPASLSNSRGEA
KSMAAMFPMLLSGMAGLPNFLGLGGLVAKSSEITSEENKGNSSRDSKDVDAKIERTETPI
VDHASENCGSSSPSTSSATALSVAAAANPLALNPLLLSNILYPGMLLTPGLNLRIPSLSQ
THIFDVQDNENSDKGFPKPTENKGEESPVTNQEKRGTEQSSYNDNSTDEGSEKADASTGS
DSTSSSSEDSGSSDED
NT seq
8691 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcccatgatggacttttttgacgatgctcaactgtttggtgagaccttggag
ggtttgtcagatgatgcgtttgttcagccagtatctgtttcacttgttgatgaattgaac
ctgggtgctgaatttgaacccttgcatgttgactcactcaaccatgttcaggagtctcaa
acgcatcaaaagataaatgactttgaaccgttaactacgttagagtccctaaaacttcac
caaccattcagtagctctgttgaaaatgttttgtctccgtgttcgcagttcagctgttcg
ccaatccattcacaaagccaggccaatggcctatttccagatgtgactggtggaagtccg
atgtgggggcatcaaacggcagctccaattgacagtcagaatgggtctccattcaatcat
caggtgcatgctcctatgcagcaaaacaaaggctttgtagcacatcatgacttttcttta
tttcagcccaatgatcaatcgcaaccacgtgcctcactgcagtctcaacaaaaccgaaat
gtcagtaatcaagggccagaaactataaaccagcaaacaaactttatggaggtcagtgat
tcatccccgcacaggacccatgttaatcagcagcctcatgttgcaaatcagtcgagtcca
cagcgttctcacactgtccaacagttcactcaaacttcagggattccaatgcactttatt
gggaatcatcttggtggcccgcaagatgtgagatatgatgggctatctcctacaatgact
ccttgttctgttggggctacccctccattttcttctccttattccttctccagtaatcat
atttcttccaacaatctcctgcagcccactactgctttagatactaatcaaccaacacac
cctctagcagattttactggaagtgaagcttttgtatcggggaccaagcaagatactaca
cagcacatcgtgaatgctgactcaccattaaacgcaaatactttccagatgtttcctcca
gtccattctcaggataactttagcagttcgaaattgtcttctgtaaacattaattatact
gcacctgtagcaactgcaactcagatcagtcattttaatgaacacatagaaagcaatgga
ttttcatctttagaggaaaacttgcttcatcatgttgaatctcaagcagagtcgttcaca
ggacttgatacagaagatcttcttcaggatgacctactgccccagtttgaagacactgca
tatggtccggacagttcagattcaggccatgctgttttggaaccacaagatatggagcct
aacagtagtcctcaacacacaaaactctcatctgatgtttctcagtcacaaagtcagttt
cacctctggcgttcaccatcccccaaccatcatcacttaaaagaccgaaatcggttcata
tcacaaggaaagcctccttccatcaagaagactgatggttcagggacatattccaagctg
cagaatacccaggtgaaagtaacttcggagaggaggcagaaaaaaaaggtggacacagag
agcaagcaagagaaggccaaccgtatcatatcggaggcaatagccaaggccaaggagcga
ggggagcgtaacattccacgggtcatgagccccgaaaatttccctagtgcttctgttgaa
agaagaacagagaagaggggacggaagatgaaatccaagccgaaggacaaggagtgcaaa
aaaaacaaaactggtctgtcttcaaagcagaaggagaagacaaaaattggtaaacttatc
attacattgggtaaaaagcagaaaaggaagaaggagtcttcagatgaaatgtccgatcca
gaacaggctgtacagcgcactttaaaagatgaagaatcccagaagaggaggtcaaaccgg
caagtgaaaagaaaaaaatatgcagaggaagcagaaggcaaaaattcagaagaggacacc
aagaccagcattaaaacaaaaaagagttgtactcttttacctgccgaacagcctttgcag
ttgttcgtggagaatcccagtgaagatgatgcttcaatcgttgacaagattttttcctca
cggatagtgaaaaaagaaacttctggaattctgattgaagaagaagaattttacgtgaaa
tacaaaaactattcatatcttcactgtgaatgggctacagaacagcatctgcttaaagat
aaaagaatacagcagaagataaagcgttttaaaatgaagcaagcacaaagagcgcatttt
tttgcagatatggaagaagaattttttaatccagactatactgaagtggaccgtgtgtta
gaagtgtcattttgtgaagataatgatactggggagtcggttacttactacttagttaaa
tggtgttcattgccctatgaagatagtacatgggaactaaaagaagatgttgaccaaact
aaaatagatgaatttgaacaactgcaagcttacagacccgatccaagacatgtggatcga
cctcttcctaacacctggaagaagatagatcagtctagagattataataatggcaacgag
ctcagggaataccaactggaaggactcaactggcttcttttcaactggtataaccgacga
aactgcatcttagcagatgaaatgggtcttgggaaaactattcagtcaatcacattcctg
tatgaaatcttcctaactggtattcgaggacctttcctaatcatagctcctctttcaacc
attacaaactgggaaagagagtttcgtacctggacagacctcaatgttgtagtgttccat
gggagcatgatcagcaggcaaatgattcagcaatatgaaatgtaccctagagacttccag
gggcgtattgttcgtggagcttacaaattccatgccattataaccacttttgaaatgatt
cttggtggatgtcaagaactcagtgccgtagagtggcgctgtgttatcattgatgaggca
cacagattgaagaataaaaattgcaaactgctggaaggactgaagctcatgaatctggaa
catatggtgttgttgacgggcacaccactacagaatactgtggaagaacttttcagtctt
cttcatttccttgagcctctgcggtttccttcagaatctaccttcatgcaagaatttggg
gaccttaaaacagaagagcaggtacaaaagctgcaggcaatcctgaaaccaatgatgttg
agacgcctgaaggaagatgtagaaaaaaagttggccccaaaggaagaaaccatcattgaa
gtggagcttaccaacatccaaaagaaatattatcgtgcaatcttggagaagaactttgcg
tttctctctaaaggagcagggcaggctaatgttccaaacctagtaaacacaatgatggag
ctcaggaagtgctgtaatcatccttatcttattaaaggagctgaagagaagattatcgga
gagtttcgagagatgcatggtcttggggctcctgactttcacctacaggcaatggttcaa
tctgctggcaaactggtactcattgataagctccttccaaagatgaaagcaggagggcac
aaagtcttgattttctctcagatggtgcgctgccttgacattcttgaggactacctgata
cacaaaaggtatctgtatgaaagaattgatggaagagtcagaggaaacctgcgacaagct
gctatagatcgctttagtaaacctgactctgatcggtttgttttccttctgtgtactaga
gcaggagggctggggatcaatttgactgcagcagatacttgtattatttttgactctgac
tggaatccacaaaatgacctacaggctcaggctcgttgtcaccggattggtcagaataaa
gctgtaaaagtttacagattaatcacacgaaactcgtatgagagagaaatgtttgacaga
gcaagtctaaaattaggtctggacaaagctgtcttacagagcatgagcggaagagaaaac
agcgttggtgggatccaacaactgtctaaaaaagcaattgaagatctgcttcgaagaggc
gcttatggagccatcatggatgaagaggatgagggttccaaattctgtgaagaagatatt
gaccagattttgcagcgtcgaactaaaaccataacaattgaatctgaaggaagaggttcc
acatttgcaaaggctagttttgttgcatccggaaatcgaacagatatttctttagatgat
cccaacttctggcagaaatgggctaagaaagcagaaatcgattttgatgctattcatggc
agaaacagcttagtaattgacacaccaagagttcgaaagcaaacaaggcctttcagtgcc
acgaaagatgagctggctgagttatctgaagcagagagtgaaggggaagataagccaaag
cttcgaagaccctgtgatcgatccaatggctatggaaggacagaatgttttagagtggaa
aaaaatctgcttgtttatggatggggccgctggagagatatactgacccacgggcgtttc
aagaggcaacttaatgaacaagatgtggaaatcatttgccgggcattgttagcttattgc
cttgttcactacagaggagatgagaagataaaaagcttcatttgggatctcatcactccc
actgaggatggacagacaagagagctgcaaaatcatcttggcttgtctgccccagtgccc
aggggtcgaaaaggaaagaaaatgaagacccagcccagcacctttgatattcaaaaggca
gactggcttagaaagtacaatccagagcatctactccaagatgaaggatacaaaaagcac
ttaaagcaccactgtaacaaggtgttgcttcgagtacgaatgctctattacctaaagcaa
gaagtcattggcaaccattacgaaaaagtatttgatggagtcgattgcagtgaaattgat
gtctgggtgccagaaccagatcatgcagaagtccctgtagactggtgggatgccgatgca
gacaaatctctccttattggcgtttttaaacatggatatgaaaagtacaacacaattaga
gccgacccatctctctgctttatggaaagagtaggaaaaccagatgagaaagcagttgct
gctgaacaaagagcaaatgattatatagacggggatgtggaagatccagagtataagcca
gcaccagcattatttaaagatgatatggaggatgatgccttgtcacctggagatcttgta
atagctgagggagattgtcaagggattgaaggggacaagacatgttggccaactcagtct
gctttgaccacacgcttgcggcgactgataactgcttatcagcgtaacagcaagaacagg
caggtcaaacagatccagcaagcattcttcctccaagctagtgtgtcacaaactccatgt
gaagaagcagttctgaatccaaaaatggcagctaaactagaaaggcagcagagatggaca
agaagagaggaagctgatttctacagagtggtttccactttcggagttgtgtttgatcct
ggaagggggcggtttgactggacaaaattcagagccatggctagactccataaaaaaaca
gatgagagtttagagaagtacttgtatgctttcatggccatgtgcagacaggtctgtcga
ttgccttcaaaagacttggtgggctcaaacatttccattcaaccaattacagaagagcga
gcctctaggaccttataccgaattgaactcctgaggaaggtgcgagagcaggctcttcga
catcctatgctgtctgatcgtttgaaactttgccaaccaaaccttgaccttcctatttgg
tgggagtgtggggatcatgataaggatttactacttggagctgctaaacatggggttagt
agaacagattatcacatactacttgacccggatctctcttttatgatggcccaaataaag
tataatcaaaataaagtggcccaaccaagagcatctactccacttctacagatggcattg
acgtcttctcctcttacaccacagtcaaagcatcaagataccaaagggaatgcagctgaa
gatgggaaggcgaaaactgaaaattcaaaagaggaaattcagtcttctgaggaagatcat
gcatccacagaccaaactggtcttgttttaaagtgtgaacctgttagcccaaaaagtgtg
atattgcctcaggctgcagagcagaaatttctttctaaaactgaaaccaacaggcgcatg
gtagcagcaaggacagagccactaactccaaactcagcttccaagaaacaaagaatccac
aagagagggtctgggtcaagctcagattcagactctgattccaatagatcatcttgctca
tctcggtcatcatcttcttcctcttcttcttcctcctcttgttcccaatcgcgatcaggg
tccagctcttcatcttcatcatcctgttcttcaacatcctcctcgtcttcatcctcttcc
tcatcttcatcctcctcatctgagaacagcaatagcgatgatgaagaaacacagaaacaa
gcagacgggaactctcatataaaagcatttgatgaggaaagtgttgcttctttaagtacc
acgcaagatgagactcaggacagctttcaaatggacaatggaacaccaaattccaactac
cttgcacaaggtggatgtgcgttgggtaactcctattggccaaaggacagagtggttatt
aatcggttagatagcatatgccaggcaatattaaaggggaaatggccttctacaagaaga
agttatgacaacaataacgttgcctctttctacaccacgaaactcctggatagccctggt
gctgcggccgactgtagcgattccagtacaccgacacctggaagcatctgtgtgaaagaa
gagcgtgatcagtcaccgcagatgtcaaaggtgaagaagcatgtacgagaaaaggagttt
acagtgaaactcaatgacgatggtgggttaaagctgactttccaaaagcagggactaatc
cagaagaggacacttgagagtgatgaggccgaaatggaacagcagcaatatttagcaagg
ctaaaggagctccagagcgcgtcagagaacagtcttgtgaattttcctaaatctctccca
gcatctgataccaccagtccattaacaggaaatgttaatggaactatattagacagccgg
cccataattaagaagagaagaggaaggaggaagaatgtggagggcattgacatcctgttt
atgaaccgaaataaagctgcaaaccacgttagtccaggtattatcaatccaatattggct
ccttcattaaagcctacgcttgcttgtgcacccacccaaaggctgcttgatgtggaaagc
tctgtacctgtcatcaacctgaaagatggaacacgattggctggtgaggatgcaccaaaa
aggaaagatttagaaaaatggcttcaagaacatccgggctatgtagaggatttaggagct
tttatacctaaaacgcagcttcatgaggggagaccaaaacagaaaagacaccgctgcagg
aaccctaataagctggatgtgaatagtttgactggagatgagcgtgttcaactaataaac
agaagaaatgcaagaaaggtgggtggggcatttgctccacctttgaaagatctgtgcaga
tttttgaaggaaaatccagagtatggggtagcccccgaatggggtgatgttgtcaagcaa
tctggttaccttccagaaagcatgattgaccgtatattaacaggcccagtggtacgcgaa
gaagtaagcaggagaggaaggcggccaaaaagtgaaattgccaaagcaaacacggcagca
tctgctgcttcagcaacatctattacattgaaccctttgttagctaatgggatgcttcca
aatgttgatctgtctgcgcttcaggctttacaacagaacctccagagcctgcagtcactg
cacttgacagcaggtctaatgggaatgcccgctagtctatcaaactcaaggggagaagct
aaaagcatggctgccatgttccctatgctgctgtctggaatggctggattacccaatttt
ctgggactggggggccttgtagcaaaatcatcagaaataacttcagaggaaaacaagggg
aactccagcagagattccaaggacgtggatgcaaaaattgaaaggacagaaacaccaatt
gttgaccatgccagcgaaaactgtgggtcgtcttctccatccacgtcatcagctactgca
ctaagtgtagcggctgccgccaaccctttagcacttaaccctttacttttatctaatata
ctgtatccagggatgcttctcactccaggccttaatctccgaattccaagtttgtcacag
acgcatatttttgatgtacaggacaatgaaaatagtgacaaagggttcccgaagcccaca
gagaataaaggggaagaatctccggttacaaatcaggagaaaagggggactgagcaaagc
tcttacaatgacaacagcacagatgagggttcggagaaagcagatgcttcaacaggatct
gatagcacgtcgtcgtcatccgaggactctggttcttccgacgaagattaa
DBGET
integrated database retrieval system
