Pleurodeles waltl (Iberian ribbed newt): 138267890
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Entry
138267890 CDS
T10800
Symbol
LSM7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138267890 (LSM7)
09123 Folding, sorting and degradation
03018 RNA degradation
138267890 (LSM7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138267890 (LSM7)
03041 Spliceosome [BR:
pwl03041
]
138267890 (LSM7)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138267890 (LSM7)
mRNA degradation factors
5'-3' decay
Lsm complex
138267890 (LSM7)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
138267890 (LSM7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
138267890
NCBI-ProteinID:
XP_069073227
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All DBs
Position
12:90365192..90375169
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AA seq
139 aa
AA seq
DB search
MSLFSISMVNTFVFLLFLLPFGARQYRGERSEGSLKMADKEKKKKESILDLSKYIDKTIR
VKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI
CPQDGMEAIPNPFIQQQDG
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcttttctatctccatggtgaacacgttcgtctttcttctatttctgttaccc
tttggcgcacgccaatacagaggcgaaaggtcagaggggagtttgaagatggcggataaa
gagaagaaaaagaaagagagtattttggatctttccaaatatatcgacaaaacaattcgg
gtaaaatttcaaggtggacgagaagcaagcggggttttgaaaggctttgaccctctcctg
aatctggtactcgatggcactatagagtatatgagagatccagatgaccaatacaaatta
acggaggacacacggcagctgggtctggttgtgtgtcgagggacgtcagtagttctcatc
tgtccacaggacggcatggaggccattcccaacccatttatccagcagcaggatggatag
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integrated database retrieval system
