Pleurodeles waltl (Iberian ribbed newt): 138268118
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Entry
138268118 CDS
T10800
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138268118 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwl03021
]
138268118 (SF3B3)
03041 Spliceosome [BR:
pwl03041
]
138268118 (SF3B3)
03036 Chromosome and associated proteins [BR:
pwl03036
]
138268118 (SF3B3)
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
138268118 (SF3B3)
Spliceosome [BR:
pwl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138268118 (SF3B3)
Complex B
138268118 (SF3B3)
Complex C
U2 SnRNP specific factors
138268118 (SF3B3)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
138268118 (SF3B3)
TFTC complex
138268118 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
138268118
NCBI-ProteinID:
XP_069073611
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All DBs
Position
12:complement(531833887..532176492)
Genome browser
AA seq
1216 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKLQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNIFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLVTVPG
GADGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMVFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRTLKNLVLVDEQDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHLEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKIIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGAEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGNGQWASVVRIMNPIQGNTLDLVQLEQNEAAFSVAVCKFSNSG
DDWHVLVGVAKDLILNPRSVAGGFIYTYKLVDGEKLEFLHKTPVEEVPAAIAPFQGRVLI
GVGKLLRVYDMGKKKLLRKCENKHLANFISGIQTIGHRVIVSDVQESFIWVRYKRNENQL
IIFADDTHPRWVTTACLLDYETVAGADKFGNICVVRLPPNINDEVDEDPTGNKALWDRGL
LNGASQKAEVVMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFF
QHVEMHLRSEHAPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDTNKQKNVADELDRTP
AEVSKKLEDIRTRYAF
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttcctttataacctgacattgcagagagccacaggcattagctatgcaatccatggg
aatttttcaggaaccaaactgcaagaaattgttgtgtcccgtggaaagatattggaactc
ctgcgtcctgatgccaacacggggaaggtgcacacactgctcacagttgaggtgtttggg
atcatccgctccctcatggccttccgtcttacaggtggaaccaaggattacattgtggta
ggcagcgactctggccgtattgtgatccttgagtatcaaccttccaaaaacatctttgag
aaaatccatcaggagacgtttggcaagagtggatgccgcaggattgttcctggccaattc
ttagcagtcgacccaaagggcagagcagtaatgatcagtgccatagaaaagcagaagctg
gtctacattctcaacagagatgctgctgcccgtctgaccatctcctccccactggaagca
cacaaagccaacaccctggtttaccacgttgttggagttgatgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaggcagataacgatccaactggtgaggca
gcagcaaacacccagcaaactcttactttctacgagttggacctgggattgaaccatgtg
gtgcggaagtacagtgaacccctggaagagcacggcaactttttagtgacagttcctggt
ggtgcagatggccccagtggagtgctgatctgttctgaaaactacatcacctacaaaaac
tttggtgaccagcctgacatccgatgtcccattcctaggagaaggaatgacctggacgac
ccagagagaggtatggtgttcgtgtgctcagctacccacaagaccaaatccatgttcttc
ttcctagcccagactgaacagggagacatcttcaagatcacgctggagactgacgaggac
atggtcactgagatccgactgaagtactttgataccgtccctgtggctgctgccatgtgt
gtgctgaaaacaggctttctgttcgttgcttctgagtttggaaatcattacctgtatcaa
attgcccacttgggagatgatgatgaggagcctgaattttcatcagctatgccactagaa
gaaggggatactttctttttccagcctaggacacttaagaacttggtattggtcgatgag
caggacagtttatctcccattctctgctgccagatcgcggatttggctaatgaagacaca
cctcagttatatgtagcttgcggaaggggaccccggtcatctctgagagtcctgagacat
ggtctagaggtgtctgaaatggccgtctcggagctgcccggtaaccccaatgctgtttgg
actgtgagaaaacatcttgaagacgagtatgatgcctatatcatagtgtccttcgtcaac
gccactctggtactgtctattggggaaactgtggaggaagtgacggactctggttttttg
ggcacaacacccaccttgtcctgctctttgctgggggaggatgctttggtgcaggtatac
ccagatgggatccgacacatccgtgcagacaagagagtgaacgagtggaagacacctggc
aagaagataattgttaagtgtgctgttaaccagcgacaagtggtgattgctctaacagga
ggagagctggtctatttcgagatggacccttcagggcagttgaatgagtacacagagcgc
aaagaaatgtctgcagatgtagtatgtatgagtttggctaacgtcccaccaggagagcag
cggtcacgttttcttgcagttggcttggtggataatactgtccgcataatttcacttgat
ccatcggactgcttgcagccattgagtatgcaggcgctccctgcacagcctgaagccttg
tgtattgtggaaatgggaggtgcagagaaacaggatgagctgggggagcgtggatcaatt
ggcttcttgtacttgaacataggactgcagaacggggtattgttgcgaactgtcctggac
cctgtcaccggagacctgtctgacaccagaaccagatacttgggctcccggcctgtgaag
ctcttccgtgtgagaatgcaggggcaagaggcggtgctggccatgtcaagccgctcatgg
ttgagctattcctaccagtcccgcttccacctcacacctctgtcgtacgagacattggag
tttgcctcaggttttgcctccgaacagtgtcctgagggcattgttgccatttccaccaac
actctgaggattttggcacttgaaaagcttggtgcggtgttcaatcaggtggcgtttccg
ctacagtacacacccaggaagtttgtcattcaccctgagagcaacaacctcattatcata
gagaccgaccacaatgcatatactgaagccaccaaagcccagagaaagcagcagatggcg
gaagaaatggtggaagccgcaggagaagatgaacgggagcttgctgctgaaatggctgct
gcgttcctgaatgagaacctcccggaagccatctttggtgccccaaaggcagggaatggg
cagtgggcatctgttgtgcgcataatgaatcccatccaaggcaataccctagatttagta
cagctggagcagaatgaggcagcattcagcgttgcagtctgcaaattcagtaacagtggt
gacgattggcatgtcctggtgggtgtggccaaagacctgatcctaaatccacgatccgtt
gctggtggcttcatctacacatataagcttgtggacggggagaagctggagttcttgcac
aagactcctgtggaagaggttcctgcggccattgctcccttccagggccgtgtccttatc
ggagtgggtaagctcttgcgagtgtacgacatggggaagaagaaacttctgagaaagtgt
gaaaataagcatctggcaaacttcatctctggcatccagaccatcggtcaccgggtaatt
gtgtcagacgttcaagaaagcttcatttgggttcgctacaagaggaatgagaaccagctc
atcatcttcgccgatgatacccaccctcgctgggtaaccacggcctgccttctggactat
gagactgtggctggtgcagacaagttcggaaacatctgtgtggtgaggctaccgcccaac
atcaacgatgaagtggacgaagatccaacaggaaacaaggccttgtgggacagaggcctt
ctgaacggagcctcccagaaggcagaagtggtgatgaattatcacgtgggtgagaccgtc
ctttcgttacagaagacaactttgatccctggaggttccgagtcccttgtctacacaact
ttgtctgggggcataggtattctggttcccttcacgtcacacgaggatcatgactttttc
cagcatgtggagatgcacttgcggtcggagcatgcacctctctgtgggcgggaccaccta
agctttcgctcctattactttccggttaagaatgtcattgatggcgacctgtgtgagcag
ttcaactccatggatacaaataagcagaagaacgtggctgacgagctggacaggacaccc
gcggaggtctccaagaaactggaagacatccgtactcgttatgccttttga
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