Pleurodeles waltl (Iberian ribbed newt): 138268165
Help
Entry
138268165 CDS
T10800
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138268165 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138268165 (EDC4)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138268165 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
138268165 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
Beta-prop_EDC4L
CelTOS
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
138268165
NCBI-ProteinID:
XP_069073687
LinkDB
All DBs
Position
12:complement(544726191..545429673)
Genome browser
AA seq
1414 aa
AA seq
DB search
MDPSGSIDISATRHLRDILKLDRPGDSPNEDPRNPSSSYNGDLNGLLSLDPLGAGDSSSL
SNVNLLNVPMKNVQDKQVICLSGDDSSTCVLIVAKDVEIVASKDSSISSKARGSNKVKIQ
PVAKYDWEQKYYYGNLIAVSNSYLAYATRGANGSAMVRVLSVTTAERILLKGIMGSVTDL
AFAHLNSSLLACLDEVGNLFVWHLSMENGKIQDEIWTNIKRPDSTPLNSFRRIIWCPFIQ
EENEDSSQEEGNQTLALLHEDRAEVWDLDIVRNNHNTWPVEVTDIKGGFIVVKGHTARLS
EGALSPDGTVLATASHDGYVKFWQIYIEGQDQPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTISWTCLQVVRFSPDPFNSSVLPGLKACLDLSAEYLI
LTDVQRKVLYVMELSQNQEEGQAAFSSISEFLLTHPVLSFGIQDVSRSRLRHTEVLPADE
EGDSLNTEDSPEPGAKESAAGILIKLFCVHTKALQDVQIRFQPHQSLDAGAMIAPQDSQE
DFMFPDHLASVTSEELGSAKGSMHGSQQDLRRIADLPLPADFMTLPTDAKPKLMTPDAFM
MPSTSLQQIAVSPASSVSTLTAVTAMSSASVNDTIISRPSEELTLSPKLQLDSSLTLSSN
NSSTTASGSIQSSPRNPTALFPGLPETITPKPPVQVTPGSLPMELQTLEPLVVPQASPTR
ERSPDVISSASTAMSQDIPEIASEILQRSFASAPPGLPVEVLDSNNHVDSMASAASALHL
LSPRNRHNSEHSLHSLDMTPAVEVERLNTPSLLETAITQDNVALDSAANQPWPAAPDITR
ETRNSMADSPREEVPEKHNSSSSSSFHRHSYHMLQQHDSQDASAEQSDHDDEIASMASSG
NFGSKGVAQRIPVKDWKSKVSPRGSPKLRRKSKKDDGELPLSPRTSDHHHHHHHHQQHLE
VQEELMSLLRSQQHELSELRQNQLELMQRLTDHMDAVQSSIMGHMERVMDSQQEQEQRRL
ERILTDGQQRNGQLQEHLLQQLSQQLSGTLSSRLDKTLREEMKKNVSQCVSKTLEPVTGQ
LSNTITAKLTAVEGQLKESVCKMVKSKNITDTIGRAAADALQGPIQAAYREAFQSIVLPA
FEKGCQSMFQQINASFKQGTQEYILQLEAQLKSKKAREQEARDPLLSQLQHSISTFQSTT
DQLTSSITTSVRSEVQHQLHVAVGNMQESILSQVQRIIKGEVSQAMKEQQAVVTSSIMQA
MRSAAGTPIPSSHIDFPSQQAHILQLMQQGHVNQAFQKALTASDLNLVRYVCETVDPQQV
LGQQPCPLSQPVLLSLIQQLSADLGNRTDLKMSYLEEAMMQLDLTDSITRDHMGIVLNQL
QQNLLQFMQAEPHNPLKRHARRLLLMVQGLAPSP
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggacccttcgggcagcatcgatatcagcgccacacggcatttacgggacattttaaag
ctggaccgacccggagactcacccaatgaagacccgaggaatcccagcagctcctacaat
ggggacctaaatggtttgctgtctctagatccactaggagccggagatagttcctctctc
tctaatgtgaacctgctaaatgtccctatgaaaaacgtccaggataagcaagtcatctgt
ctctctggagatgacagttccacctgtgtgctgatcgtggccaaagatgtggagattgtg
gcgagtaaagattccagcatcagtagcaaggccagagggagcaacaaggtaaaaatacag
ccagttgccaaatatgattgggagcagaagtactattatggcaacctgattgcagtctcc
aattcatatctagcatatgctacccgaggtgcaaatggatctgccatggttcgtgttttg
agtgtcaccacggctgagcggatcttgctgaaaggcatcatgggcagtgtgacagacttg
gcctttgctcacctcaactccagtctgctggcctgccttgatgaagttggcaatctcttt
gtatggcacctgagcatggagaatggaaaaatacaagacgagatatggactaatataaaa
agacctgacagcacaccgctaaactccttccgtagaataatatggtgtcctttcattcaa
gaggagaacgaagacagttcccaggaagaaggaaaccaaactctggccttgctgcacgag
gacagggcggaggtttgggacctagacattgtacggaataaccacaatacctggcctgta
gaggttacggatatcaaaggcggctttattgttgtcaagggacataccgcacgtcttagt
gaaggagccctctcaccagatgggacggtcttggcaactgccagtcacgatggctatgtc
aagttctggcagatatacattgagggacaagatcagccaagatgtctacacgaatggaag
ccccatgacggtagacccctctcctgcttgctattttgcgacaaccacaagaaacaggat
ccagaggttccgttctggaggtttttgatcactggggcagatcaaaacagagaactgaag
atgtggtgcacaatttcatggacctgtcttcaggttgtccgtttttcaccagacccattc
aattcaagtgtactccctggcctgaaagcttgtctagatctctcagctgaatacctgatt
ctcactgacgtgcaacggaaagtgctgtatgtgatggaactgtcacagaaccaagaggag
gggcaagctgcattttcatccatctccgagttcctcttgacacacccggtgttaagtttt
gggatccaggatgtgagtcgtagtagactaaggcatactgaagtgctgccagcagacgag
gagggagacagcctaaacacagaagactctccggaaccaggagctaaagaatctgctgca
ggcattctaataaagctgttctgcgtgcatacaaaggctctacaggatgtgcagatccgc
tttcagcctcaccagagtttggacgcaggcgccatgatagcaccacaggactcacaagaa
gacttcatgtttccagatcacctagcctcagtgacatcagaggagttggggtcagctaaa
ggatcaatgcacggttcacagcaagacctgcgtcgtattgctgatctacccttgccagca
gacttcatgacattgccaactgatgctaagcccaagctaatgacacctgatgccttcatg
atgcctagcacatcactccagcagattgctgtttcgccagccagcagcgttagtaccctc
actgcagtgacagccatgagcagtgcatccgtgaacgacaccataatatctagaccctca
gaagagctgactttgagcccgaagttgcagctggacagtagcttgactttaagcagcaac
aacagcagtaccactgccagtggtagtatacagagcagtccgaggaatccaactgcactc
tttcctggattgccggaaacaataaccccaaagccacctgttcaggtcaccccaggcagc
cttcccatggaacttcagacactggaaccactggtggtccctcaggcctcacctactcga
gaacgttcccccgatgttatctcttcggcctcaacagccatgtcacaagatatccctgaa
attgcttccgagatccttcaacgcagctttgcctcagctccacctgggcttcccgtagag
gtcctcgattccaacaatcacgtggacagtatggcttctgctgcctctgcgctacacctt
ctgtccccgagaaaccgccacaactctgaacacagccttcactctcttgacatgacacca
gcagtggaggtggagcgtttgaacaccccttccctcctggaaactgccatcactcaggat
aatgttgccttggacagtgctgctaaccagccatggccagctgctcctgatatcaccaga
gaaacacgcaacagcatggcagacagcccccgggaagaagttccagagaaacacaacagc
tcgtcatcctcatccttccacagacacagttatcacatgctacaacaacatgatagccaa
gatgccagtgctgaacaaagcgatcatgatgatgaaattgccagcatggcctcctctgga
aattttggctccaaaggtgtggcacaaaggatacctgttaaagattggaagtctaaggtt
tccccacggggatcacctaaactcagaaggaaaagcaagaaagatgatggggagctgcca
ctatcaccgaggacatcggaccaccatcaccaccatcatcatcaccagcaacacttggag
gttcaggaggaattgatgtctctactacgtagccagcaacatgagctgtctgagttacga
cagaaccaactggagctgatgcagcgacttactgaccacatggatgctgtacaaagctcc
attatggggcacatggaaagagtgatggattctcagcaagaacaagaacagagacgatta
gagagaatcctgacagatgggcaacagaggaacggccagctccaagaacatctcttgcag
cagctgtcccagcaactctctggaactctgagcagtcgactggacaaaactctacgtgag
gagatgaaaaaaaatgtttcacagtgtgtctctaagactttagagccagtcactggacaa
ctcagtaacacgatcactgccaagctgacagccgtggaggggcagctgaaggagagtgtg
tgcaaaatggtcaaatccaagaacataacggacaccattgggagagcggcggcagacgcc
ctgcagggaccaattcaggcggcctacagggaggcgttccagagcatcgtgctgcccgcc
ttcgagaagggctgccagtccatgtttcagcagatcaatgccagcttcaagcaggggacg
caggaatatatcctgcagctggaggctcagcttaagagcaagaaggcacgtgagcaggag
gcccgggaccccctgctgagccagctgcagcacagtattagcactttccagagcaccact
gaccagttaacatccagcatcacaacgagtgtgagatccgaggtgcagcaccaactgcat
gttgcggtgggaaacatgcaggaatctattctatcccaggtgcaaaggatcatcaagggt
gaagtgagccaagcaatgaaggagcaacaggcagtagttacatccagcattatgcaggca
atgaggtccgctgctggcacacccataccctcttctcacattgactttccatcccagcaa
gctcacattctgcagctgatgcagcagggtcatgtcaatcaggcatttcagaaggctcta
actgcatctgatctgaatttggtgaggtacgtttgtgaaactgtggacccccagcaagta
cttggtcagcagccttgtcccctctcccagccagtcctcctttcgctcattcagcaactt
tctgcagatttaggcaaccgcacagatttgaaaatgagctatctggaagaagcaatgatg
cagctggacctcaccgactccatcactcgtgaccacatgggtattgtcctgaaccagctg
cagcagaatctcctccagttcatgcaagcggaaccccacaaccccctgaaaaggcatgcc
cggcgcctcctgttgatggtgcaaggccttgccccctcaccttga
DBGET
integrated database retrieval system
