Pleurodeles waltl (Iberian ribbed newt): 138268359
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Entry
138268359 CDS
T10800
Symbol
COPA
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pwl04131
]
138268359 (COPA)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pwl04147
]
138268359 (COPA)
Membrane trafficking [BR:
pwl04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
138268359 (COPA)
Exosome [BR:
pwl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138268359 (COPA)
Exosomal proteins of bladder cancer cells
138268359 (COPA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_WDR41
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
138268359
NCBI-ProteinID:
XP_069074020
LinkDB
All DBs
Position
12:616700514..616946381
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
TNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLSSVKIAKVKYVIWSSDMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVVERVRILKNCGQKSLAFLTAATHGLDEEAESLKETFDP
EKETIPEIDPDAMLLQPPPPVMPLDTNWPLLTMSKGFFEGAIASKGKGNAMAADIDIDTV
GAEGWGEDAELQLDEDGFVDATEGFGDDGIGKGHEEGGGWEVEEDLDLPPELDIAVGPAG
GAEDGFFVPPTKGTSPAQIWCNNSQLPVDHVLAGSFETAMRLLHDQVGVTDFTAYKQHFL
QTFSRGRTSYQALPGLPSMYGYPHRNWKDAGLKNAVPSVGLKLADLIQRLQQCYQLTTSG
KFEEAVEKFRQILLSVPLLVVDNKQEISEAQQLIAICREYIVGLSMEIERKKLPKDTLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPDVAQQ
TRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQV
CRVTTATEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgcttactaagtttgaaaccaagtctgctcgggtgaaagggcttagctttcaccccaaa
cggccttggattttaaccagcttgcacaatggtgttattcaactatgggattaccgcatg
tgcacccttattgacaagtttgatgagcatgatggccctgtccgtggcattgactttcac
aaacaacaaccgctgtttgtatctggaggcgatgattacaaaataaaggtttggaactac
aaattgcgccgctgtctgttcactcttcttggacaccttgattacatccgcaccactttc
ttccatcatgaatacccatggatattgagcgcttctgatgatcagaccatccgtgtgtgg
aattggcagtcaaggacctgtgtctgtgtgcttacaggacacaatcactatgtaatgtgt
gcccagtttcacccctcggaggacctagtggtgtctgccagcttagaccagactgtgcgc
gtttgggatatttctggcctgagaaagaagaatctctcacctggagctgttgaatctgac
gtccgtgggattactggtgttgatttattcggcactacagatgctgttgtgaagcatgtt
ttggagggacatgatcgtggtgtaaattgggctgcctttcatcccacaatgcctctaata
gtttctggggctgatgatagacaggtcaagatctggagaatgaatgaatccaaggcctgg
gaagtggatacatgccgtgggcactacaacaatgtttcgtgtgcagtatttcacccacgc
caagagttaatactaagtaattcagaagataagagtattcgtgtctgggacatgtccaag
cgaactggagtccagacattccgtagagatcatgaccggttttgggttcttgctgcccac
accaacctaaatctctttgctgcaggacacgatggaggaatgattgtttttaaactagaa
cgtgagcgcccggcttatgcagtccatggaaacatgctgtactacgtcaaagaccgcttc
ttacgtcagttggacttcaacagctcaaaggacgtagcagtcatgcagttaagaagtggt
tccaaattcccagtgtttaacatgtcatataatcctgcagagaatgctgtcctgttgtgc
acaagagccagtaacctagagaacagcacttatgacctctacaccattccaaaggacgca
gactctcaaaatcccgatgcccctgaaggaaagcgctcctcaggccttactgctgtctgg
gtagctcgcaatcgctttgctgtcttggatcgcatgcattcgatcctgatcaagaacttg
aagaatgaaatcacaaaaaaagtgcaagtgccgaactgtgatgagattttctatgctggt
acaggaaacctgcttctgcgagatgctgactccattaccctttttgatgtacaacagaaa
aggactctgtcgtctgtgaagattgccaaggtgaagtacgtgatttggtcatcagacatg
tctcatgttgcacttctggcaaagcatgctatcatgatttgcaatagaaaactggaatct
ctctgtaacattcatgagaacatcagggtcaaaagtggagcatgggatgaaagtggagtg
ttcatctacacaaccagcaaccatatcaaatatgctctaactacaggggaccatggaatc
attcgtacactggacctgcccatctatgtgactagagtgaaaggcaacaacgtgtactgt
ttggacagagagtgtcggccacgtgtcctcacaattgaccccactgaatttaaatttaaa
ctggcacttattaaccgcaagtatgatgaggttcttcacatggtgagaaatgccaagcta
gtgggacagtcgatcattgcctatctgcagaagaagggctacccggaagtggccttgcat
tttgtcaaagacgagaagaccagattcagtcttgcactagagtgtggcaatattgagatc
gccttggaagcagccaaggctctggatgataagaactgctgggagaagctaggagaggtg
gccctcttgcagggaaaccaccagattgtggagatgtgctatcagcgcaccaagaacttt
gacaagctatccttcctgtatctgatcacaggcaaccttgaaaagctgcgcaagatgatg
aagattgctgagattcgtaaggacatgagtggacactatcagaatgcactgtaccttgga
gatgtagtcgaacgtgtgcggatcctcaaaaactgtggacagaagtctctagcttttctc
actgctgccacgcatggcttggacgaagaagcggagagtctgaaggagacgtttgaccct
gagaaggaaaccattccagagattgacccagatgcaatgctgctacaacctcctccccct
gtaatgccattggacaccaactggccactgctcaccatgtctaaaggcttctttgaagga
gcaattgccagcaaaggtaaaggaaacgcgatggctgctgacattgatattgacacagtt
ggagctgaaggatggggcgaagatgcagagttgcagctggatgaagatggttttgtggat
gccacagaaggatttggagatgatggcatcggcaaaggacacgaggaaggaggtggttgg
gaagtggaggaagatctggatctcccaccagagctggacatcgctgtaggtcctgctggt
ggagcagaggatggattttttgttccacccactaaaggaaccagtccagctcagatctgg
tgtaacaactcccaactcccggttgatcacgtgctggctggttcttttgagactgctatg
aggctccttcatgaccaggtcggggtgaccgacttcactgcctacaaacagcactttttg
caaaccttctctagaggacgcacctcctaccaagctctgcctggtctaccttcaatgtat
ggatatccacatcgcaactggaaggatgcagggctgaaaaatgcagttccatcagttggc
ttgaaacttgctgacctcatccaacgcctgcaacaatgctaccagctcaccacatctggc
aagtttgaagaggcagtggagaagttccgacagattctgctgagtgttccactgcttgtg
gtggataataaacaggagatttcggaggcccagcagctcatcgcaatctgcagagaatac
attgttggactatcaatggaaattgagcgtaaaaagctccccaaagatacccttgagcag
cagaagcgaatctgtgagatggcagcttatttcacgcactccaatctgcagcctgtgcac
atgatcctggtactccgtactgcacttaatctcttcttcaagctcaagaacttcaagaca
gcggcaacctttgcacgtagactcttggaacttggtccaaagccagatgtggcacagcag
acacgcaagatcctttccgcatgtgagaagaatccaactgatgcatatcaactaaactac
gatatgcacaacccttttgatatatgtgctgcttcttatcgccctatctaccgcggtaag
cctgtggagaagtgcccgctaagtggtgcctgctacagcccagagttcaaggggcaagtc
tgcagagtcacaacagcaacagagattggcaaggatgttatcggcttaaggatcagcccg
ctccagttccgttaa
DBGET
integrated database retrieval system
