Pleurodeles waltl (Iberian ribbed newt): 138268403
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Entry
138268403 CDS
T10800
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138268403 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138268403 (SMG5)
03032 DNA replication proteins [BR:
pwl03032
]
138268403 (SMG5)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
138268403 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
138268403 (SMG5)
DNA replication proteins [BR:
pwl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
138268403 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
EDRF1_N
Motif
Other DBs
NCBI-GeneID:
138268403
NCBI-ProteinID:
XP_069074101
LinkDB
All DBs
Position
12:625026365..625371056
Genome browser
AA seq
1042 aa
AA seq
DB search
MSQGAESEPEAKALHTKRLYRAVVEAVHRLDLILCNKTAYQEVFKPDNISLRNKLRELCV
KLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSALECAYRTHLIAGIGFYQH
LLLYIQSHYQLELQCCIDWTHVTDPLIGSKKPVSASAKEMDWAQMACHRCLVYLGDLARY
QNELAGVDTEHLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQSEVS
FDGASGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVSFMYLQSLLQPKSSS
VDAELTSLCQSVLEDFNLCLFYLPMNLNLSTASEDEEEYESRYSFLPDLLIFQMVIICLM
SVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGDNPVPAFQNDNFDDPEVR
ESPSVPEKGVEPSTDAVSVDASQEQRPKRVSKKTKKYSCLSRLRRRRHPQKVDESDLSEG
FDSDSSQDSTKGSENSDSGSEKSYEEAEAAFDVETDSDMNSQESRSDLEDIEYEPNGECK
GKVLKVPQEALKDTEEMADCKNQTVPKIENPDPAANGPGLAPSDASIASNLQAMSTQMFQ
TKRCFRLAPTFSNVLLKPNHELSAAKSVDSKPIMNGDAEKPGVVEPDDGSDSEDSVVSSK
SCRNERSLQEKLEVVASEGLLPIVKVFLDWLRTNTDIIIMCAQSSQSLWNRVSMLLNLLP
NATKIREAGIPLCSDVVDLLMSCELPDLSTNLLLPEDVALRNLPPLRSAHKKFSFDQERP
MLTALEESVARICCIRSFGHFLTHLQGSILQYNPEVGIFISIAQSDQENLLHQTQAQFRM
AQEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQHLPIIRHL
VNSGSFIIIIPRTVIDGLDFLKKENGGARDAIRYLEVEFKKGNRYLRCQKDTGKSFERHK
LKRQDVDAWHLYKILDSCKQLTVAQGGGEEESTGMVTIITAFQLDDASTFSAPMQAAIQA
AASASVEMKNVLEFYKQWKEMG
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagggggcagagagtgagcccgaagccaaggcactgcacaccaagcgactctat
cgggctgtggtggaagctgtgcacagactagatcttatcctttgtaacaaaactgcctac
caagaggtgttcaagcctgacaacatcagtctgagaaacaagttacgagagctgtgtgtg
aagctgatgtttttgcacccagtggattatggcaggaaagcagaggaactgctttggaga
aaggtttactatgaagttatccagcttatcaaaacaaataaaaagcacatccacagtcgc
agtgccctggagtgtgcctatcggactcacctgattgcaggcattggattttaccagcac
ctactactctacattcaatcacattaccagttggagctacagtgctgcattgattggaca
catgtgactgatccacttatcggttctaaaaaaccagtgtctgcatctgcgaaggagatg
gattgggcacagatggcatgccacagatgtcttgtctatctgggagatttggctcggtat
cagaatgagttggctggagtggacacagagcatttagcagagaggttttactatcaagca
ctttcagttgccccacagattggtatgccatttaatcagctgggaacattagcagggagt
aaatactataatgtggaagcaacctactgctacttgcgatgtatccagtccgaagtatca
tttgatggtgcttctgggaacctgaaaagactgtacgacaaggctgccaaaatgtatcat
cagttgaagaaatgtgaaactaggaagctttcaccaagcaagaagcggtgtaaggacata
aaacgactgttagtgagctttatgtacctgcaaagcttattacaacccaaaagcagttct
gtggatgcagagttgacctcactctgccaatctgtgcttgaggatttcaatctttgcttg
ttttatctacccatgaatcttaatctgagcacagcaagtgaagatgaagaggaatatgag
agtagatactctttcctgcctgacctgctcatcttccaaatggtgatcatctgtcttatg
agtgtgcacagcctgaagagggcaggttccaagcagtacagtgcagctatagctttcact
cttgccctcttctctcatctaataaaccatgtcaacatcagactgcaagctgagctggaa
gaaggtgataatccagtccctgctttccagaacgataattttgatgatccagaagtaaga
gagtccccgagtgtcccagaaaagggagtggagccttctacagatgctgtctccgttgat
gcaagccaggagcagagaccgaaacgtgtctccaagaaaaccaaaaaatattcttgcttg
tcccgcctgaggagacgtcggcatccacagaaagtggacgagagtgacctaagtgaaggt
tttgactccgattctagccaagactccaccaaaggcagcgagaattcagacagtggctcg
gagaagagctatgaagaggcagaggctgcttttgatgtggagacagactctgatatgaat
agtcaggagtctcgctctgacctggaagacattgagtacgagcccaatggggagtgtaaa
ggcaaggtccttaaagtaccccaagaagcattaaaggacactgaagaaatggctgattgc
aaaaaccagacagtccccaaaattgagaatcctgatcctgctgctaatggtcctggactg
gccccaagtgatgctagcatagctagtaacctccaagccatgtccacccagatgttccag
actaaacgctgctttcgcctagcacccacttttagcaatgttcttttgaagcccaatcat
gaactatctgcagcaaagtcggtggacagcaagcccataatgaatggggatgcagaaaaa
cctggcgtagttgaaccagatgatgggtctgactctgaagacagtgttgtcagcagcaaa
tcctgtcgaaatgaaagaagtcttcaggaaaagctggaggttgttgcgagcgagggttta
cttccaattgtcaaagtcttcctagattggctacgaacaaacactgacataattatcatg
tgtgcacagagctcccagagtctctggaacagagtgtcaatgcttctaaaccttttacca
aatgcaacaaagatacgggaagcaggaattcctctctgcagtgatgtagttgacctgctg
atgagctgtgagcttccggacctgagtaccaatctgctgctacctgaggatgtggcactg
cgcaacctcccccctttacgaagtgcgcacaagaagttcagctttgaccaggagaggcca
atgttgactgcactcgaggagtcagtggctcgtatatgctgtatccgaagctttgggcac
ttcctcacccatctgcaaggcagcattctgcagtataacccggaggttggcatatttatt
agcattgcccagtccgaccaagagaatctcctccatcagacccaagcacaattccgcatg
gctcaggaagaagcaaggcgtaaccgtctcatgagagatatggctcagctccgactgcag
ctggaagtgtcacaacttgaaggaagcctgcagcagccaaaggctcagtctgcgatgtca
ccataccttgtcccagacactcaggctctttgccagcacctgccaatcatcaggcacttg
gtcaatagtgggagcttcattataatcatacctagaacagtgatcgatggattggacttt
ctgaagaaggagaatggaggagctcgtgatgcaatccgctaccttgaggtggagttcaaa
aagggaaaccgataccttcgttgccagaaagatactggaaaaagctttgagaggcacaag
ctgaagagacaagatgtggatgcttggcacctttataaaatcttggacagctgcaaacag
ctgacggtggctcaagggggtggcgaggaggagtccactgggatggtgaccatcataact
gcttttcagttggatgatgccagcacattttctgcacccatgcaggcagcaattcaggca
gcagccagtgccagcgtagaaatgaagaatgtgctcgagttctacaaacagtggaaagag
atgggttga
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