Pleurodeles waltl (Iberian ribbed newt): 138274069
Help
Entry
138274069 CDS
T10800
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138274069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138274069
Spliceosome [BR:
pwl03041
]
Complex A
U1 snRNP components
U1 related factors
138274069
Complex B
138274069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
DTW
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
138274069
NCBI-ProteinID:
XP_069075063
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MRPPYMGHPGIPHFQRMGMPHMGQRMPNMPPVSHGMMPQMMQHMGGPMGGPSMGQMPGMM
PSVMPGMMMPHMPQPPMQPQPTVMQGGNLDAPLGPAHPPNLPPGLPSNQPTHPAVPAPQS
MNAVNTSVIEDQKPKQKSMWTEHKSPDGRIYFYNIETKQSTWEKPDELKSPAEQLLSKCP
WKEFKSDSGKSYYYNSQTKESRWAKPKELEDLEAMIKVEATIKQEDSAPVSSAPTASAPE
MTNIPLPVPATVSAPVSAPVSSPIPVPVSAPLSAPLVAPLVAPLAAPLAAPLAPPGVAPL
VPPLAAPLAAPLAGPLAAPLGVPLAAPMAVPVAPIAVPVASPIVSAATPVSTVSSITAPA
AAVFPPVESEVAAVAPTLGLENEIVPDSNEEQAPPATQENDDTTSSVSEDVSKADDVASP
ASTDEKEENKVAKKTYTWNTKEEAKQAFKELLKAKRVPSNATWEQAMKMIINDPRYSALA
KLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKENFQRFLENHERMTSTTKYKKAEQMYGE
MEVWNAISERDRLEIYEDVLFFLAKREKEQAKQLRKRNWEALKNILDNMANVTYCTTWSE
AQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQRGLLRERRRQRKNRE
SFQLFLDELHEHGQLHSMSSWMELYPTLSSDIRFSNMLGQPGSTALDLFKFYVEDLKARY
HDEKKIIKDILRDKTFLVEINTSFEDFVTVISSTKRATTLDAGNIKLAFNSLLEKAEARE
REREKEEARKMKRKEALFKSMLKQAAPPIEMDAVWEDIRDKFIKEPAFEDITLESERKRI
FKDYIHALE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccaccatatatgggtcacccaggcattcctcatttccagcgcatggggatgcca
cacatgggccaaagaatgccaaacatgcccccagtgtcacatggaatgatgccccagatg
atgcagcatatggggggtcccatgggaggaccgtcaatgggacagatgcctggtatgatg
ccatctgtgatgcctggtatgatgatgcctcatatgccacagcctccaatgcagccacag
ccaacagtaatgcaaggaggtaacctggatgctcctttgggccctgcccatcctccaaat
cttccgcctggtcttccctctaatcagcccacacatcctgcagttcctgctccacagtcg
atgaatgctgtcaacacttctgtgattgaagatcagaaacctaaacaaaaatctatgtgg
actgaacataaatctcctgatggaagaatatacttttataacattgaaactaagcagtcg
acatgggaaaagccagatgagcttaaatcccctgctgagcaattgttatcaaaatgtccc
tggaaagaattcaagtctgattctgggaagtcttattattacaactctcagacaaaagaa
tcccgttgggcaaaaccaaaagaacttgaagacctggaagccatgatcaaagtggaagct
accattaaacaggaggattctgctccagtgtcttctgctcctacagcgtctgcaccagag
atgacaaatatcccactccctgttcctgctacagtgtctgctccagtttctgctcctgtt
tcttcgcctattcctgtgccagtttctgctcctctatcggctcctctggttgctcctctg
gttgctccactagctgctccactagctgctccccttgctcctcctggtgttgctcctctt
gtacctccgcttgctgcacctttggctgctcctctggcaggtccccttgcagctccttta
ggtgttccgcttgctgcaccaatggcagtcccagttgccccaattgcggttccagttgct
tctcctatagtttctgctgctactccagtgagcactgtatcctctatcactgccccagca
gcagcagtttttcctccagttgaatctgaagttgcagctgttgctcctacacttggatta
gaaaatgaaattgttccagattcaaatgaagagcaagctcccccagcgacacaagagaac
gatgacactactagtagtgtttcggaagatgtttcaaaagcagatgatgttgcaagcccc
gcttcaacggatgaaaaggaagaaaacaaagtagctaagaaaacctacacctggaacaca
aaagaagaagcaaaacaagcatttaaagagcttttaaaagcaaagcgtgtaccatccaat
gctacctgggaacaagcaatgaaaatgatcattaatgacccccgatacagtgctttagcc
aaattgagtgaaaaaaaacaagcattcaatgcctacaaagtccagactgagaaagaagaa
aaagaggaagcaagatccaaatacaaagaagctaaagaaaactttcagcgattccttgaa
aatcatgaaaggatgacctctacgacaaaatacaagaaagctgaacaaatgtatggagaa
atggaagtatggaatgcaatatccgaacgggatcgcctcgaaatatatgaagatgttttg
ttcttcttggctaaacgtgagaaggaacaagccaaacaactgcggaaaagaaattgggag
gccttaaaaaacattttagacaatatggctaatgtgacctactgtactacgtggtctgaa
gcacagcagtatctgatggacaatcctacttttgcagaggatgaagaacttcaaaacatg
gataaagaagatgcactgatatgctttgaggaacatatcagggctttggaaaaagaagag
gaagaggaaaaacagaggggtttactacgtgaaaggcggaggcagcgtaaaaacagagaa
tccttccagttatttttggatgaattgcatgaacatggacaattgcattccatgtcttct
tggatggagctgtatcctactctaagctctgacataaggttttctaacatgcttgggcag
cctggctccacagcacttgaccttttcaaattttatgttgaagatctgaaagcacgatat
catgatgaaaagaaaataataaaagatattttaagggataaaacatttttggtggaaata
aatactagctttgaagactttgtcactgtgataagttcaactaagcgtgctaccacacta
gatgctggcaacatcaagcttgctttcaacagtttattggagaaggctgaggcaagagag
cgagaaagagaaaaagaagaagctcgcaaaatgaaacgcaaggaggcccttttcaagagc
atgttgaagcaagctgcacctccaattgaaatggatgcagtctgggaagatattcgggac
aaatttattaaagaaccggcatttgaggacataacccttgaatctgaacgaaaacgaata
tttaaagactacattcatgcacttgag
DBGET
integrated database retrieval system
