Pleurodeles waltl (Iberian ribbed newt): 138274815
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Entry
138274815 CDS
T10800
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56-like
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pwl04121
]
138274815
Enzymes [BR:
pwl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138274815
Ubiquitin system [BR:
pwl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
138274815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-B_box
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Siva
DNA_pol3_delta2
Motif
Other DBs
NCBI-GeneID:
138274815
NCBI-ProteinID:
XP_069075119
LinkDB
All DBs
Position
2_2:1130018288..1130091523
Genome browser
AA seq
731 aa
AA seq
DB search
MEHMKTSLVDVLQKDFLSCGICSGLYKSPKLLPCMHSYCHGCLNLLVKDGSLRCPQCSLI
VTVKDCTSGLKTNTFLNNLIDLFQSKIKNPEGISCSSCQKAVTPTHHCLHCNGFLCHACT
NNVDSSCATLDHKVVALGEFLSGKHDVEARLCQQLFCHDHQHEPLTFYCDTCKTVLCKKC
HLLAHAQHPVVTAAEAVLTKKTEVTALIEDLEFHIKSIAEREDQLDNDFEMVQKAAAGID
KSINEYVNKLTALLLQRKEATLVELDLLLKERREQHLSMKKELTGQKEREIRTRRFAQMV
VDLGKDIDVLSMTEVIKGRVLELERFTPQLFEMNIPELVVGLKEKALSEFKHFVLRITKE
RFEGTEVNADKRVSLAVALPHSIALSTEGNMSLIDTLPPKESFQAMQVLHREHNLTPRLT
ILLHESSSDEESDGWLEQSESSNEYHSTDEGATSDGDDWFLNKVFPPTNQRPVCVGAFEI
NQYMDFATPKITGLTVNRSGEIIMCDKANDDIKWFSPDGIAGNCILPPEPEGSLPLCGLA
MCGDILVCSSGCYLLFLTLEEKLLQKIKLRGPHPPYAIASYRSSYVAVSEGSLCSVSLYK
TSGQCVGRVQPAGCQGGKFLFIAINSQEVFIVSDFFQKKIILFKRSGEIVNVLDTSSPLL
REPFSLCVDSHDHVFVVDQERVLEFTPDGIFGRVILSTGNGLEDPRLLTVDKKQRLILVH
KQDYAKIFQLT
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggagcacatgaaaacaagtctggttgatgtcctccagaaggatttcctgagttgtggg
atttgctctggcctctacaagtcaccaaaacttctgccatgtatgcacagttattgtcac
gggtgcctaaacctcctggtgaaggatggatccctgcggtgcccccagtgcagcctgatt
gtgacagtcaaagattgtacctctggcctaaagaccaacaccttcctcaacaacctcata
gaccttttccagtctaagataaagaatccagaagggatcagctgctcttcctgccaaaag
gctgttacccctacccaccactgcctgcattgcaatggcttcttatgccacgcttgcacc
aacaatgttgacagttcttgtgcgactcttgaccacaaagtagttgccctaggggaattc
ctcagtgggaagcatgatgtagaggcaagactgtgtcagcagttgttctgccatgaccac
cagcatgaacccttaaccttctactgtgacacttgtaaaacagttctctgtaagaaatgc
cacctactggcccacgcccaacatccagtggtcactgcggcagaggctgtcctaacaaaa
aaaacagaagtgaccgcgctgatcgaagatttggaatttcatattaagagcatcgctgaa
cgtgaggaccagctggacaatgattttgagatggtgcaaaaagctgctgctggcatcgac
aaaagcatcaatgaatatgtgaacaagcttactgctcttctcctccaacggaaagaagcc
actctggtggaactggacctgttgttgaaagagagaagagagcagcatctgtccatgaag
aaggagctcacggggcagaaggagagggaaataagaacaagaagatttgcccaaatggtg
gttgatttgggtaaggatattgatgtactctccatgacggaggtgataaaaggtcgggtc
ctggaactggagcgattcactccacaactatttgaaatgaacattccagaactggttgta
ggtttaaaggaaaaagcactttccgagtttaagcacttcgttttgcggatcaccaaagaa
aggtttgaaggaacggaggttaatgctgacaaaagggtttccctggcagttgctttacct
cacagtattgccttgtccacagaggggaatatgtcacttatagacaccctgcctccaaaa
gagagttttcaagcaatgcaagtgctgcacagggaacataatttgacccccagacttact
atccttctacatgagagctcttctgatgaggaaagtgatggttggttggagcaatctgag
tcatctaatgagtatcactcaacagatgaaggtgcaacctccgatggcgatgactggttt
ctgaacaaagtgttccctcctacaaaccaaaggcctgtgtgtgttggagcttttgagata
aaccagtacatggattttgcaacacctaagatcactgggttgactgtcaatcgttcaggt
gaaattatcatgtgtgacaaagcaaatgacgatataaaatggttctccccagatgggatt
gctggaaactgtattcttccccctgagcccgagggatcccttcctttatgtggccttgct
atgtgcggggacatacttgtatgctcctctggctgctaccttctattcttgactttggag
gagaaattgcttcagaagatcaagctgcgaggtccccaccctccatatgccattgcatca
tacaggtccagctatgttgcagtcagcgagggcagtttgtgttctgtttctctttacaag
acttctggccagtgtgtgggcagagtgcagcccgcaggttgtcagggaggcaaattcctc
ttcattgctatcaacagccaggaggtctttattgtctctgacttcttccaaaagaagatc
atcctcttcaagaggtcgggagagattgtcaatgtactggacacatcctcgcctctgctg
agggagccatttagtctgtgtgtggattcacacgaccatgtctttgtggtggatcaggaa
agagtgttagaatttaccccagatggtatatttggtcgggtcatactgagcacagggaat
gggctagaagaccctcgcctcctgactgtggacaaaaaacaacgtctcattctggttcat
aaacaagattatgcgaaaatatttcagctcacttaa
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