Pleurodeles waltl (Iberian ribbed newt): 138283886
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Entry
138283886 CDS
T10800
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138283886 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138283886 (MTREX)
03041 Spliceosome [BR:
pwl03041
]
138283886 (MTREX)
03009 Ribosome biogenesis [BR:
pwl03009
]
138283886 (MTREX)
03016 Transfer RNA biogenesis [BR:
pwl03016
]
138283886 (MTREX)
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138283886 (MTREX)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138283886 (MTREX)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138283886 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
138283886 (MTREX)
Ribosome biogenesis [BR:
pwl03009
]
Eukaryotic type
Pre-60S particles
Helicases
138283886 (MTREX)
Transfer RNA biogenesis [BR:
pwl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138283886 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
138283886
NCBI-ProteinID:
XP_069078194
LinkDB
All DBs
Position
1_1:302024797..302654672
Genome browser
AA seq
1031 aa
AA seq
DB search
MADAFGDELFSVFEEDSSAGKSKAAQGPAKPDKGGKRPDGRPQPVPIGTSVKNKRDVELD
SEDVIFGKKLKLDASSEDVNLADLMPRIKVQAVETVEGCTHEVALPEDDDLIALKPRTGK
SAKEYPFILDAFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDTGESSKGDQKGRKGGTKGP
SNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNSDEEKKMVEEVFNNAIDCL
NDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINM
PARTVLFTSARKFDGKDFRWLSSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGKQL
LKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPAVVEKVKKLEEQ
YNKIEIPNEESVVTYYKIRQQLAKLSKEIEEYIHKPKYCLPFLQPGRLVKVKHEDEDFGW
GVVVNFSKKSNVKQSTGELDPLYVVEVLLHCSKESVKNAATEAAKPVRPEEKGEMQVVPV
LLHLLSSISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLK
KVIQKIEAFEHRMYSHPLNNDPNLETVYKLCERKAKIAVDIRAAKRELKKARTVLQMDEL
KCRKRVLRRMGFATSSDVIEMKGRVACEISSADELLLTEMTFNGLFNDLTAEQSTALLCC
FVFQENSSEMPKLTEQLAGPLRQMQETARRIAKVSAEAKLEIDEELYLNSFKPNLMDVVY
TWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagctgttcagcgtgttcgaagaggatagcagtgccggg
aagtccaaggcagcccaagggccagccaagcccgacaaaggaggaaaacgacctgatgga
agaccccaaccagttcctattggcacatctgtcaaaaacaagcgagatgttgaactggac
agtgaagatgtcatttttgggaaaaaactaaaattggatgcctcttcagaagacgttaac
ctggcagacctgatgccaagaatcaaagtgcaagctgtggaaacagtagaaggctgtaca
catgaggttgccctacctgaagatgatgacttaatagccctaaagccccgaactggaaaa
tctgccaaggaatatccatttatccttgatgctttccaaagggaagccattttgtgcatt
gataataaccagtccgtcttggtttctgctcatacatctgctggaaaaactgtctgcgct
gaatatgctattgccctagctctgagggaaaagcagcgagtaatatttactagtccaatt
aaggccctgagtaaccagaagtatcgtgagatgtatgaagaattccaagatgtgggtttg
atgactggagatgtcactattaaccctactgcatcatgtcttgtgatgactacagagatc
ttaaggagcatgttgtatagaggatcggaggtcatgcgtgaagtggcatgggttattttt
gatgaaattcattacatgcgtgattcagagcgtggtgttgtgtgggaagaaaccattata
ttgcttcccgacaatgtgcactatgtgtttctttctgctactatcccaaacgcccgccag
tttgctgagtggatttgtcatcttcataaacagccttgccatgtcatatacacagactac
cgacccacccctctccaacattacatcttcccagctggaggtgatggactgcatcttgtg
gttgatgaaaatggagatttcagggaagataacttcaacactgcaatgcaggttttaaga
gatacaggcgagtcctctaaaggggaccaaaagggacggaaaggggggacaaaaggtcca
tctaatgtatttaagattgtgaagatgatcatggaaaggaactttcagcctgtaattatc
ttcagtttcagtaagaaggactgtgaggcctatgcactacaggtttcaaagctggacttc
aacagtgatgaggaaaagaaaatggttgaagaggtatttaacaacgcaattgattgcctg
aacgatgaagacaagaagctacctcaagttgaacacgtgctgcctctcctgaaaagagga
atcggcattcatcatggaggtttgcttccaattctaaaggagaccatagaaattcttttt
tctgaaggattgattaaggccttgtttgcaactgagacatttgcaatgggaattaacatg
ccggcgagaacagtgttgttcactagtgcccgcaagttcgatggcaaagattttcgctgg
ctttcatctggtgaatacattcaaatgtctggtcgagccggcagacgaggcatggatgaa
agagggattgttattctcatggtggatgaaaagatgagccctaccgttgggaagcaactt
cttaagggttctgctgatccattgaacagtgcttttcacctaacttacaacatggttctc
aacttgttgcgggtagaggaaattaatcctgaatatatgctggagaaatctttctatcag
tttcaacattacagagccattcctgctgtagtggagaaggtaaagaaattggaggagcag
tacaataagattgaaattccaaatgaagaaagtgtggttacctactacaagattcgacaa
cagcttgcaaaactaagcaaagagattgaagaatacattcataagcccaaatactgcttg
ccctttttgcaaccaggcaggctggtcaaggtaaagcatgaggatgaagatttcggatgg
ggagtggtggttaatttttcaaagaaatcaaatgtaaagcaaagtacaggcgaattggat
ccactttatgtggtggaggtattgttgcattgcagtaaggaaagtgtaaagaatgctgca
accgaggcggctaaaccagtcagacctgaagagaaaggagaaatgcaggttgttcctgtt
ttgttgcaccttctgtcttctatcagcagtgttaggctatacatccccaaagatcttcga
cctgtcgacaatcggcaaagtgtgttgaaatcaattcaggaagtacagaagcggttccct
gatggagtaccattattggatcctattgatgatatgggcatcaaagaccagggactgaaa
aaagtaattcaaaaaatcgaggcctttgaacacaggatgtattctcaccccctcaataat
gacccgaatttggagactgtatataaactttgtgaaaggaaagccaagattgcagtggat
attcgagcagcaaaacgagaactgaagaaggccagaacagtattgcagatggatgagcta
aagtgtcgaaagcgtgttctaaggagaatgggctttgctacctcatctgatgtcattgaa
atgaaagggcgtgttgcttgtgaaattagcagtgctgatgaacttcttctcacagaaatg
acatttaatgggctatttaatgacttgactgctgaacaatcaactgccttgctgtgctgc
tttgtgttccaggaaaattcgagtgaaatgccaaaattaactgagcagttagctggaccg
cttcggcaaatgcaggaaactgcacgaagaatagctaaagtttcagctgaagccaaattg
gaaattgatgaagaattgtacttaaactctttcaagcccaatctcatggacgtggtgtac
acttgggcgaatggagccacatttgcacagatctgcaagatgactgatgtctttgaagga
agtatcattaggtgcatgaggaggttagaagaattacttcgacagatgtgccaagccgca
aaagcaattggaaacactgaactggagaacaagtttgcagagggaattacaaaaattaaa
agggatattgtctttgctgcaagcctgtacctttga
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