Pleurodeles waltl (Iberian ribbed newt): 138284505
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Entry
138284505 CDS
T10800
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03082
ATP-dependent chromatin remodeling
pwl03083
Polycomb repressive complex
pwl04110
Cell cycle
pwl04330
Notch signaling pathway
pwl04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138284505 (HDAC1)
03083 Polycomb repressive complex
138284505 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
138284505 (HDAC1)
04350 TGF-beta signaling pathway
138284505 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
138284505 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pwl03036
]
138284505 (HDAC1)
Enzymes [BR:
pwl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
138284505 (HDAC1)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
138284505 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
138284505 (HDAC1)
BRAF-HDAC complex
138284505 (HDAC1)
REST complex
138284505 (HDAC1)
SHIP complex
138284505 (HDAC1)
MiDAC complex
138284505 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
138284505 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
138284505 (HDAC1)
Chromatin remodeling factors
NuRD complex
138284505 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
138284505
NCBI-ProteinID:
XP_069079470
LinkDB
All DBs
Position
3_1:701114223..701274844
Genome browser
AA seq
479 aa
AA seq
DB search
MALSLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPNKSN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTASFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYEAI
FKPVMTKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGG
GGYTIRNVARCWTFETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAVADDSADEDDEDPDKRISIRSADKRIACDEEF
SDSEDEGEGGRKNVANFKKSKRVKTEEEKDGEEKKDIKEEDRAKEDKTDTKSELNNLRG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagtctggggacaaagaagaaagtctgttactactatgacggagatgttggg
aattattactatggacaagggcaccccatgaagccccacaggatccgtatgactcacaac
ctcttgctcaactatggactttacaggaaaatggagatctatcggcctaacaagtccaat
gcagaggagatgacaaagtatcacagcgacgactacataaagtttctgcgatcgatccga
cctgataacatgtcggagtacagcaaacagatgcagcgattcaatgtcggagaagactgc
cctgtgttcgatgggctctttgagttttgccagctttctgccggaggttctgtagccagc
gctgtcaaactgaacaagcagcaaacggacattgcagtgaactgggccggcggactccac
catgccaagaaatctgaggcttccggcttctgctacgtgaacgacattgtcttggccatc
ttggagttactgaagtaccaccagagggtgctgtatatagatatcgatattcaccatggt
gatggtgttgaagaggccttttacaccactgaccgtgtcatgactgcatcattccacaag
tatggagagtactttcctgggacgggggacctgcgggacatcggagcggggaagggcaaa
tactatgctgtgaattttcccctccgggatggtattgatgatgagtcctatgaagccatc
tttaaaccagtgatgacaaaggtgatggagatgtaccagcctagtgctgtcgtcttacag
tgtggtgctgattcactctctggggatcgacttggctgctttaatttgaccatcaaaggg
catgccaagtgcgtggagttcataaagacgttcaacctgcccctgctgatgcttggtggc
ggtggttacactatccgtaatgtggcccgctgctggaccttcgagacagctgtagctctg
gattctgaaataccaaatgagctgccatacaatgactactttgaatactttggaccagat
ttcaaacttcacatcagtccatccaacatgacgaaccagaacaccaacgagtacttggag
aagataaagcagcgtctctttgagaacctgcgtatgcttccacatgcacctggtgttcag
atgcaggccatcccagaggatgcagttgcagacgacagtgcggatgaagatgatgaggac
ccggacaaacgcatttcaatccgttcagcagacaagaggatagcatgtgatgaagaattc
tctgactctgaagatgaaggcgaaggtggacgcaaaaatgtggcaaacttcaagaaatcc
aaacgtgtgaagactgaagaagagaaagatggcgaggagaagaaagatataaaggaagag
gacagggcgaaggaggacaaaaccgataccaagagtgagctgaacaacctccgtggatga
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