KEGG   Pleurodeles waltl (Iberian ribbed newt): 138285228
Entry
138285228         CDS       T10800                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pwl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138285228 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pwl03041]
    138285228 (SNRNP40)
Spliceosome [BR:pwl03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    138285228 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    138285228 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_SCAP NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR19_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Cytochrom_D1 WD40_like Beta-prop_Nup120_160 WDR54 PQQ_2 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 138285228
NCBI-ProteinID: XP_069080999
LinkDB
Position
3_1:1391405985..1391515195
AA seq 347 aa
MLEPNKRKGQEMVLVPPKRPRPDLLPPGTPPGAMLPVGPPRTSSLQAPIMLLSGHEGEVY
CCKFHPNGATLASAGFDRLILLWNVYGDCENYATLKGHSGAVMELHYSTDGSMLFSASTD
RTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLMYMMRGHADSVTSLSISTEGSYL
LSNAMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGGRVAAGSADRFVY
VWDTTSRRILYKLPGHAGSVNEVAFHPDEPIVLSASSDKRLYMGEIL
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgctggaacccaacaagcgcaagggccaggagatggtgcttgtgccacccaagaggccg
cggccagatttgctgccccccgggacgcctccaggagcaatgttgcccgtgggcccgcct
cgaacctccagcctgcaggcaccaatcatgctgctttctgggcacgaaggagaagtgtat
tgctgcaaatttcacccgaatggagctaccctggcatcggcaggctttgacagactgata
ttgctgtggaatgtttatggagactgtgaaaattacgctactctaaaagggcacagtggc
gcagtcatggagctacattatagcactgatggcagcatgcttttctcagcctccacagac
aggacagtagctgtttgggacagtgagacgggcgagagagtgaaaaggttaaaaggacat
acttcatttgtgaattcctgttacccagcaagaaggggaccccagctagtctgcacaggc
agcgatgatggaacagtgaagctgtgggatatccggaagaaggccgccgtccagaccttc
cagaacacataccaggttctatcagtaacattcaatgataccagcgatcagatcatctct
ggaggcatcgataatgatatcaaggtgtgggaccttcgtcagaacaagttgatgtacatg
atgcgtgggcacgcggactctgtgactagtctaagcataagcactgaagggtcctaccta
ctttctaatgccatggataacacagttcgtatctgggatgtgcgcccgtttgccccaaag
gagcgatgtgtgaaaatattccagggaaacgtccacaactttgagaagaatctcttgagg
tgttcttggtcccctgatggaggaagagtggcagcaggatctgccgacagatttgtttat
gtctgggacacaacatctaggaggattctgtacaagttaccagggcatgcaggctccgtg
aatgaggtggcctttcatccagatgagcccattgtgctctcggcatctagtgataaaaga
ttgtacatgggagaaatcctctga

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