Pleurodeles waltl (Iberian ribbed newt): 138285490
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Entry
138285490 CDS
T10800
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pwl04147
]
138285490 (COL18A1)
00535 Proteoglycans [BR:
pwl00535
]
138285490 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138285490 (COL18A1)
Exosome [BR:
pwl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138285490 (COL18A1)
Proteoglycans [BR:
pwl00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
138285490 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138285490 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
LDL
Motif
Other DBs
NCBI-GeneID:
138285490
NCBI-ProteinID:
XP_069081559
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All DBs
Position
3_1:1686081354..1686447819
Genome browser
AA seq
1657 aa
AA seq
DB search
MAPVRREVASLMLLVTCLSLADAQFLGWIWGNTENAVTTLPPVTSNPIHPSTADQPEPTA
AGTVSPKPQEMLAKTTGAPSTKLQELLARTVPASTRAPSAKAQELLAKTVPVVTEAPSTK
PMEPLARTTPTPPTTKEQSEEKVWGIFQLKKADPAVDPKPEDTAASGMGALNTTAAAVAT
LSAVAQPEHHTAKQKANLAGVGAEILNVAEGIRDLVQKWDGKKNKEIEGAEGPTAAILIT
APATTVQSDGTPDPGLRPLEVLEERDIHLTGTEATKQVATITTRQESSQSEMVNLTDDGK
SLTPSPLSATDTLLLLPKRMLFPLPQNKARNLASQNGTVNASDNGEHQPEILSPEVGLLQ
LIGDPPPDQIVKIFGPDNSPGYVFGPDANTGQVARYHLPSPFFRDFSLLFHVQPTTSKAG
MLFAITDASQSIIYVGVKLSEVKNGKQQIIFYYTEPGSQTSYAAATFTVTSLVNQWTRFA
ISVEDEEVVLFLDCDEFERVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIAELRVR
GDPRAAELQCEDEEDDTDVISGDFGSGVEERPTTGTKTVTEKVTVAPSKLPEQQPVTSPP
IAVTPSDPDESFRIEKVPETEKEPPLVLPPVTALPGPKGAKGEPGEKGAQGLAGPKGDSG
SSVGLATADGRGEKGEKGELGIKGNAGFGYPGSKGQKGELGLPGPAGPPGPPATVVRKND
GSVVEQVSGPQGPPGPPGPEGKEGPPGKDGEPGDPGEDGKPGDVGPQGFPGTPGDSGMKG
EKGDPGVGVKGPPGPPGPPGPPGIASKLDKLTFIDMEGSGYGGDVESIRGPPGIPGPPGP
PGVPGLPGVPGEFGMNHSAGLPGPAGRDGAPGLQGPPGLPGLPGKDGIPGSPGPAGASGE
PGELGLPGANGQKGDAGIPGLPGNPGETGLAGLPGPIGPRGVPGLPGPPGPPGPGFGAGL
DDMEGSGNPFISRGTQGAIGPPGQKGEAGFPGLDGQPGLDGFLGPPGQKGEPGERGEPGR
DGIGIPGPPGPPGKIIHVTSNNEAVDVDSPGYENRPGAAGFPGPIGPKGDHGTPGLAGPT
GPKGEKGESGAYFGHVGSLLPLESKGEKGDPGFPGPIGPVGPHGHPGQKGEIGFPGRPGR
PGMNGVKGEKGDPTDPSAILAARGLPGLPGPPGPPGPPGNSNFGNNGFRDSGYPGLPGQK
GDRGIPGLPGPQGERGDVGPAGPPGSFPFDLNSFVSRLREESGMKGEKGEPADGFHEDGG
FGPAGPPGRPGPPGPSVQGPPGPPGPQGPPGIGYEGRQGPPGAPGLPGPPGSPSFPGPHR
QSISIPGPPGPPGPPGIPGVSGASSGVTVLQTYQTMLSLAHRMPEGGIVLVLERSELFVR
VRDGFRKILLGQYFSLTGEGQGNEVAVEQPPIIQYPQGNTGYIQPAQENIKPPQHPTSRP
WREDQHHPEQPPNEPVANSFQPNSGPHSNPAAIHRHQDFQPALHLIALNAPLSGSMRSIR
GVDLQCFEQARAAGLKGTFRAFLSSRLQDLYSIVRRADRNSIPIVNLRDEVLFDNWESLF
SGSEAQLKAGARIFSFDGKDILRDSAWPHKMLWHGTDSKGRRLTESYCETWRTDDSVVTG
QASSLLNGKLLEQKAQSCNKAFAVLCIENSFMTSSKK
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgtgcgccgagaggtcgcttccctgatgctgctggtcacctgtctctccctt
gccgatgctcagtttttaggatggatttggggcaataccgagaacgccgtgaccactctg
ccaccggtgaccagtaacccaatccacccttcaactgcagatcagcccgagcccactgca
gcggggactgtgtcccccaaaccccaggaaatgctggccaagaccacaggggcaccttcc
accaaactccaggaactgctggccagaaccgtgcccgcatccacaagagcaccgtctgcc
aaagcccaggagctgttggccaagaccgttcctgtagtcactgaggcaccttccaccaag
cccatggaaccactagccagaaccacaccaactccaccgaccacaaaggagcagtctgaa
gagaaagtatggggcatctttcaactgaaaaaagcagacccagcagtggacccaaaacca
gaggacaccgctgcatcaggcatgggtgcattgaacaccactgctgcagccgtggccacg
ctctcagccgtagcgcaaccagagcaccacactgctaaacaaaaggcaaaccttgctggt
gttggggccgagatattaaatgttgcagaagggatacgtgacctggtgcaaaaatgggat
ggtaaaaaaaacaaagaaattgaaggtgctgagggacccacagctgctatactcataaca
gcgcctgccaccacagtgcaatcagatggaacccctgacccaggccttcgtcctttagag
gtccttgaggagcgtgacatccacctcacaggaaccgaggcgacaaagcaggtggccacg
attactacaaggcaagagagtagccagagtgaaatggtcaacctcacagatgatggcaaa
agtcttacgccaagtcccctgagtgcgacagacacactcctactacttcccaaaaggatg
ttgttccccttaccacagaataaggccaggaatttggcatctcaaaatgggaccgtcaat
gcgtcagacaatggtgagcaccagccagagatcttgagcccagaggttgggctccttcaa
ctcattggtgatccaccaccagaccagatcgtcaaaatctttggtcctgacaacagccct
ggttatgtcttcggccctgatgccaacacgggccaggtggcccgctaccacctgccgagc
cccttcttccgtgacttctcactccttttccatgttcaacccaccacctccaaggcaggt
atgctttttgctatcactgacgcctcccagtccatcatttacgttggtgtgaaactctca
gaggtgaagaacgggaagcagcagataatcttctactatacagagcctggttcgcaaaca
tcctacgcagcggccacattcacagtcacttcgctggtcaaccagtggacgcgttttgcc
atcagcgtagaagatgaagaagtggtcctcttcctggactgcgatgagtttgagagggtc
cgtttcgagcgctcacctgatgagatggaattggaggatgggtcaggcctctttgtggcc
caagccggtggtgctgaccccgacaaatatcagggggtgattgcggagctgagagtgagg
ggggaccctcgagcagcagagctgcagtgtgaggacgaggaggatgacactgatgtgatt
tctggagattttggaagtggagtggaggagaggcccaccactggcacaaagactgtcact
gaaaaggtcactgtagctccatccaaactccccgagcagcagccagtgacctccccaccc
atcgccgtcacgccctcggaccctgacgagagcttcaggattgagaaggttcccgaaacg
gaaaaagagccaccattggttttgcctccagttacagcgctgcctggccccaaaggcgca
aagggagagcctggtgagaagggggcacaaggtctagctggccccaaaggagacagcggc
agctcagtgggtctggcaacagcagacgggagaggagaaaagggtgaaaaaggtgaactt
ggcatcaagggtaatgcgggctttggctatcctggttcaaaaggacaaaaaggggagctg
gggcttccaggacctgcaggcccccctgggccccctgccactgtggtgcgtaaaaatgat
ggttctgtggttgagcaggtgtctggtccccaaggacctcctggcccccctggacctgaa
ggcaaggaaggtcctcctgggaaagatggagaacccggcgatcctggagaagatggtaaa
cctggcgatgtgggacctcaaggatttccaggcactccaggggattctggcatgaagggt
gaaaagggagatcctggtgttggagtcaaaggcccaccaggacccccaggaccaccaggg
ccccctggaattgcttctaaactagataaattgacattcattgacatggaaggttctggc
tatggtggagatgtggagagtatcaggggacccccaggtattccaggccccccaggacct
ccaggtgtccctggattgccaggcgtgccaggtgaattcggcatgaaccacagcgcagga
cttcctggccccgcagggcgagacggcgctcctggactgcaaggacccccaggtctgcca
ggtctgccaggaaaggatggaattccaggaagcccaggaccagcaggagcatcgggtgaa
cccggtgaactcggtctcccaggagccaatggacagaagggggatgcaggaatcccagga
ctaccagggaatccaggtgaaactgggttagccgggctccccggacccatcggaccgcgg
ggggttccaggccttcctgggcccccaggacctccaggaccaggatttggagctgggctt
gatgatatggaaggttccgggaatccgttcatttctcgtggtacacagggggcaattgga
ccaccaggccaaaagggagaagctgggtttccaggcctagatggtcagcccgggttagat
ggatttctcggacccccgggacaaaaaggagaacctggtgagcggggagagcctgggcgt
gatggtattgggataccaggccctcctggtccacctggaaagattatacatgtaacatca
aataacgaggcagtggatgtagattcacctggttatgagaacagaccgggagcggctgga
ttcccaggcccaataggtcctaagggagatcacggaactccgggcttagctggaccgaca
gggccaaagggtgaaaagggagagtcaggagcatactttggccatgttggaagcctcctg
cctttggaatccaaaggagagaagggtgatccaggatttccgggaccaataggcccagtg
ggaccacatgggcatcctggacagaaaggagagatcggttttccaggaagacctggtcgt
cccggcatgaatggagtcaagggtgagaaaggggaccccacagatccaagtgccatactt
gctgccagaggcttacctggacttcctggtcctcctggtccaccaggcccacctggaaac
tccaactttggcaacaatgggttccgtgactcaggatatcctggactaccaggccaaaag
ggtgatcgaggtatccctggccttcctgggccacaaggagaacgaggggacgtaggacct
gcaggcccaccaggttccttcccatttgatctcaactcgtttgtgtccagactaagggag
gagtctggaatgaagggagagaagggtgagccagctgatggtttccacgaggatggtggc
tttggacccgctggtcctccaggacggcctggacctccaggaccgagtgttcaaggccct
cctggaccaccaggaccacagggtcccccaggaattggatatgaaggacggcaaggtcca
cctggtgccccaggactccctggtccaccaggttccccctcatttcccggaccccacaga
caaagtattagtatccctggacccccaggtccacccggcccaccagggatccccggtgtt
tctggtgcatcttcaggggtgactgtgctgcagacctatcaaaccatgctgagcttggct
catcgaatgcccgaggggggcattgtccttgtcctggaacgttcagagctttttgtgcga
gtgcgagatggtttcagaaaaatacttcttggacaatatttctccttgactggcgaggga
cagggcaatgaggttgcggtagaacagccaccaatcatccagtatcctcaggggaatacc
ggctacatccagcctgcacaggaaaacataaaacctccacaacatcccacgagcagacca
tggcgagaggaccagcatcaccccgaacagccacccaatgagccagtcgcaaacagcttc
cagcccaactcagggccacacagcaaccctgctgctatacacagacaccaggacttccag
cctgcgcttcacctcattgctctaaatgcccctctgagtggtagtatgcgttcaatccgt
ggagtggatctccagtgctttgaacaggcccgtgcagccgggcttaaaggcacattcagg
gcattcctgtcctccagactacaggacttgtacagcatcgtcagaagagctgatagaaac
tccatacctatagtgaacctcagggatgaagttcttttcgataactgggagtctctcttc
tcgggctctgaagctcagcttaaagcaggtgcacgcattttctcattcgatgggaaggac
atattacgggactctgcttggcctcacaagatgctgtggcatggtacggactcgaaggga
cgacgactgaccgagagctactgcgaaacttggaggactgacgacagtgtggtgacagga
caggcatcgtcgctcctgaatggcaaactcctagagcagaaagcacaaagctgtaacaag
gcctttgcagtgctctgcatagagaacagcttcatgacgtcctccaagaaatag
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integrated database retrieval system
