Pleurodeles waltl (Iberian ribbed newt): 138285536
Help
Entry
138285536 CDS
T10800
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138285536 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138285536 (SKIC3)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
138285536 (SKIC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_17
TPR_11
TPR_12
TPR_8
TPR_9
ANAPC8
TPR_15
ANAPC3
ARM_TT21_2nd
BTAD
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
138285536
NCBI-ProteinID:
XP_069081676
LinkDB
All DBs
Position
1_1:complement(528681711..529708417)
Genome browser
AA seq
1564 aa
AA seq
DB search
MSTKEVKVALKSARDAIRNKEYKDALKHCKAVLKVEKTNYNAWVFIGVAATELDQPDQAH
AAYKKATELDPDQLLAWQGLGSLYERFNQKDFKDDLPKVYEKLLVLYEGSEKQKWCEVCR
KLVDLYHQEKKYLQVGRFWQRLIAAREEEGAEKEEVHQLWKRMTQLLANTAQNQDSETHQ
LLLIAFEKALSSADKIPSDDHQRLYKDFIHCLSQFPNDHAKLRETCKDMMVLYPGLSYPL
EVLSLNFIQTGCCNEEAVSCFYKLDQLDSENGLSKIGLGIKLFQDKKYEEAEKSLSTGLL
KASFCTSAWCSLAQVQLKMHRYEEAILSSNQALKTLMQCNASVGNLHIKKLILQVKAEAM
IRDGDPGYLEEAVKSIEEIPDAATDPVLLSIKGWAYLNNVLYDKTSKIAEGLVHSHPQLS
EGYALTGRLHYAHKNYAMAELSLQQAIEKKPDCADYYCLLGLTYWSMGEETRNDRTKALN
QFLKAAKLDPYLGKVFLYLGHYYKDVAKDPVRARGCYRKAFELDATDADAGAAAVDLSVE
LGDMEAALAILTTVTNRASAGTVKWAWLRRGLYFLRAGQHSQAVADFQAALRADPKDSNC
WECLGEAYLSRGGYTTALKSFTKASELNPESIYSIYKVAAIKQTLGKYKESVTEYQHIIK
KSKDYVPALKGLGECNLMMAKSALRDYLDGKAVDHIEQAIEFFTRAVQHRPDVSCLWKLL
GDACTTLHCVSPPKVNVRVLGLIVGQKAEKQMLSKNELLCLGGRCYSRALKLQSSANLWC
DLGINYYYQAKNLTDNTNAPVSELLEKSLQCLKKAVMLDSQSHLYWNSLGVVACSSEIAN
YALAQHAFIKSIQSEQNNVAAWTNLGILYIVNENIELAHEAFKVAQSLEPSYVTCWIGQA
LIAEAVGSYETMDLFRHTTELSMHTEGAKGYAHWVCSTLEDKTNRNTELYKYNILQMNAI
STAQIVMSKFTGRIQSDPSTFTMLGYLNEHLHLRIQATDAYKRAVLLLQNSDEKEKYNSA
LRNYGRLLCSTGYYDKAIKTYMSTPLTEFDEITGLALAYFKKGCLQESFKAYEKALTAAE
SEQDKAHVLTALAIIEYKRDKVDSAKTILFKCSILKEPSIESLQALCALGLAKRDVTLST
AALNELLKHIGRKDSIYDRCLITSALCALQGRNMAVQRQASKAIHRHPGDYALWTLLSRL
VPEYTPQNAKGGAVAGKVAHNLNFNQAKTSHLYTAVNLLAAGSLSSDNKKDNALKTIQRA
VHLFPDDPAAWAGLLSACYTENTVSYLKNAQPKRAELDIMFAATVSATLEHRADLQNNYT
QALEKWSVFQSVIGLKDSGKISQAEDHCTKYLKSCSDHPAVLLLLRQVQCKQLLLSHKPL
SETILEELKKTVASNFNNITAWHWLAEVYQSQGMMVAAEMCYRKGLQLASQQNNWNGKLS
SLLRLAMLAYKVCLARIPNNRWPALVQEAVAEALKISFCPLAVLLQGLQQFNIKMGARDT
RRILERVVYQPSYPNSCAAVARWYLLRHLHAKYDYELIDVLIENVKANGDVKVLELHEKL
SAAS
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactaaagaagtgaaagttgctttgaaaagtgccagagacgcgattagaaataaa
gaatacaaagatgccttgaaacattgcaaggcagtgcttaaagtggagaaaaccaactat
aatgcctgggtttttattggagtggccgcaacagaactagaccagccagatcaggcacac
gcagcttacaaaaaagccacagaacttgaccctgatcagctcttggcgtggcaaggccta
ggaagtctgtatgagaggttcaaccagaaagatttcaaagatgacttgcctaaagtttat
gaaaaacttttggtactctatgagggttctgagaaacaaaaatggtgtgaagtgtgcaga
aaacttgtcgacctttatcaccaggaaaagaaatatttgcaggttggtcgattttggcaa
agactgatagcagcaagggaagaggaaggtgcagaaaaagaagaagtccaccaattatgg
aagagaatgactcaactactggcaaatactgcacaaaaccaggacagtgaaacacaccaa
ctgctgctgattgcatttgagaaagcactttcctctgctgataaaattcctagtgatgac
catcaacgtctctacaaagattttattcactgtctgtctcagtttcccaatgatcatgca
aagttgagagagacgtgtaaagatatgatggttctctaccctgggctgagttatccatta
gaagtccttagcctgaacttcattcagactggatgttgcaatgaagaagctgtcagctgt
ttttacaagcttgaccagctggactcagaaaatggcctgagcaagattggtttaggaata
aaattgtttcaggataaaaaatatgaagaagctgagaagagtctctctacagggttgtta
aaagcgagcttctgtacatcagcatggtgtagtctggcacaggtccaactgaaaatgcac
agatacgaggaagccatattatccagcaatcaagcgttgaagacgctaatgcagtgtaat
gcatctgttggcaatcttcatataaaaaagcttatattacaagtgaaagcagaagctatg
atccgagacggtgatcccggctacttagaagaagcagtgaagtccatagaagagattcca
gatgctgccactgacccggtgctgttatccatcaagggctgggcgtatttgaacaatgtt
ttgtatgataaaacatcaaagattgccgaaggactcgtgcattcacatcctcagttgtca
gaaggctatgctctgacaggacgtctacattatgcacataaaaactatgcaatggcagaa
ttaagcttgcaacaagcgatcgaaaagaagcctgactgtgcagattattattgcctcttg
gggttgacctactggtccatgggtgaagagacgcggaacgatcgaacaaaagccctaaat
cagtttttgaaggctgcaaagctggacccatatcttggaaaggtgtttttatatttaggt
cattactataaagatgttgctaaagacccagtcagagcacgtggctgctataggaaagct
tttgagcttgacgccactgatgcagatgcaggagcagcagctgtggacttaagtgtggag
cttggtgatatggaagctgccttggcaattttaacaactgtgactaatagagccagtgct
ggaacggtaaaatgggcctggcttcgacgtggactctactttttaagggctggtcagcat
tcacaagcagtggcagattttcaggcagcattacgagcagatcctaaggattcaaattgc
tgggaatgtctaggagaggcatacttgagcagaggaggatacacaacagcactaaagtca
ttcaccaaagccagcgaacttaacccagaatctatctacagtatctataaggttgcagct
atcaagcagaccctgggaaagtataaagaatctgtaactgagtaccaacacattatcaag
aagtcaaaagattatgtgcctgctctgaaagggctcggagagtgcaatctcatgatggcg
aagagtgctcttagagattatcttgatggaaaggctgtggaccacatagaacaagcaatt
gagttttttacaagggctgtacagcatcgtccagatgtctcctgcctttggaagctgctt
ggtgatgcatgcaccactttgcattgtgtctcaccgccaaaagtgaatgttagagtgttg
ggactaatagttggccagaaggctgaaaaacagatgctgtctaaaaacgaactcctatgt
cttggtggaaggtgctacagcagagctttgaaactgcagtcctcagcaaatctttggtgt
gaccttggaataaattactactatcaagcaaaaaacttaacagataatacgaatgctcct
gtcagcgagttactggaaaagtctttgcagtgtcttaaaaaagcagtaatgctggacagt
caaagccatctatactggaactctctaggtgttgttgcctgctcctcggaaatcgcaaac
tatgctcttgctcaacacgcctttatcaaatcaatccagtcagagcaaaataatgttgca
gcttggaccaatttaggaattttgtacattgtaaatgaaaacattgagctagctcatgaa
gccttcaaagtagcccagtccctcgaaccttcttatgtcacgtgctggattgggcaggct
cttattgcagaagcagtgggcagttatgaaaccatggatctctttagacatacaactgag
ctcagtatgcatactgaaggtgcaaaaggatatgcgcattgggtctgttcaactctggaa
gacaagacaaacaggaatacagaactttataaatacaacatcctgcaaatgaatgccatc
tccacagcacaaattgttatgagcaagttcacaggaagaattcagagtgacccctctaca
ttcacaatgcttggttatctaaatgaacatctgcatttaagaattcaagccacagatgca
tacaaaagggcagttttgctattgcagaacagtgacgaaaaagaaaaatacaactctgca
ttaagaaattatggcagattgctttgctcaacaggctattacgataaggcaattaagact
tacatgtctacccctctgacagagtttgatgaaatcacagggcttgcactagcttatttc
aagaaaggatgcttacaagaaagcttcaaagcctatgaaaaagcacttacagctgctgag
tctgaacaagataaagcacacgttcttacagccctcgcaataattgagtacaaacgtgat
aaagtggactctgcaaagacgatattgtttaaatgttcaattctaaaagagcccagtatt
gaaagccttcaagctctttgtgctttgggacttgcaaagcgtgatgttactctctcaaca
gcagcacttaatgagttgctaaagcacattggtagaaaagacagtatttatgatagatgt
ctgattacatctgcactctgtgcactgcagggaagaaacatggctgtgcagaggcaggca
tccaaagctattcatcgacatccaggagactatgccctttggactcttctgtcacgactt
gtcccagagtacacgccacaaaatgcaaagggtggtgctgtggcaggaaaggttgcgcat
aaccttaactttaaccaagcaaagacatcacacctctacactgcagttaatcttttggca
gctggaagtctatcatctgacaataaaaaggataacgcattgaagaccatccaaagggca
gtccatctttttccagatgatcctgctgcgtgggctggcctactatctgcctgttacaca
gaaaatacagtttcatacttgaagaatgcacagcctaaaagagcagaactagacattatg
tttgctgccactgtttcagctacgttggagcatagagcagaccttcaaaataactacaca
caggcactagaaaaatggtctgtgtttcagtctgttattgggttgaaagattcaggcaaa
atttcacaagctgaggatcattgcacaaagtatttaaaatcgtgttctgatcatccagca
gtgctcctgcttttgaggcaagtccaatgtaaacagctcttgctctcacacaaaccacta
tcggaaaccattttggaagagctgaaaaaaactgttgcatcaaatttcaataatataaca
gcttggcattggttggccgaagtctaccagtcccagggaatgatggttgcagcagagatg
tgttacagaaaaggtcttcaattggcatcacagcagaacaattggaatgggaagctttcc
agccttctgcgattagccatgcttgcatacaaagtgtgcttggcacgaattccaaataat
cgttggccggccctggttcaggaggcagttgctgaagccttgaagatttccttctgtcca
cttgctgttttgcttcaggggctacagcagttcaacatcaaaatgggggcaagggacact
cgtcgtatcttggagagggtcgtataccagcctagctaccctaactcctgtgctgcagtt
gcacggtggtacctcctacggcatttgcatgccaagtatgattatgaacttattgatgtt
cttatagaaaatgttaaagctaatggagatgttaaagtcctggaacttcatgaaaaattg
tcagcagcttcataa
DBGET
integrated database retrieval system
