Pleurodeles waltl (Iberian ribbed newt): 138285627
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Entry
138285627 CDS
T10800
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
138285627 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pwl04131
]
138285627 (VPS8)
Membrane trafficking [BR:
pwl04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
138285627 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_UBOX
zf-RING_2
zf-RING_5
Beta-prop_WDR5
zf-C3HC4
Beta-prop_WDR3_1st
WDR55
ECSIT_N
IBR_1
Motif
Other DBs
NCBI-GeneID:
138285627
NCBI-ProteinID:
XP_069081916
LinkDB
All DBs
Position
3_1:complement(1781300020..1782796978)
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AA seq
1417 aa
AA seq
DB search
MEGELSGVPEDEDAHSSSAGPQRDSILAAVDYVEVEPGGEVIDDKEFDIPQVDTPPTLES
ILNETDDEDESFIPEDASLLNLETIDTYSCDTSSLASSDSGDRTHLKRKKRLQDAFSRHG
SVMRHSLLKGISAQILSAAEKVDAGLPTAIAVSNLIAVGTSHGLALIFDPNQALRLCLGN
TAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSISDAHPPGTAILHIKF
TDDPTLAICNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKPDLKEHPI
TQYSLLAMASLTKILVIGLKPALKVWMTFPYGRMDPSSVPLLAWYFTAVQNVVNPMLAFC
RGDAVHFLLVKRDESGAIHVSKQKQLHLHYDIINFTWMNSRTVVLLDSAEKLHVIDRHSQ
EELETIEISEFQLVYNSSHFKSLATGGNVSQALALVGEKACYQSICSYGGQIFYLGTKSV
HVMLLRSWRERVNHLLKQEHFTEALALAWSFYEGKAKAVVGLSADVSKRKGVVGDQMVEI
LFQFADRALKKCPEQGKIQVMEQHFQDMVPVIVDYCLLLQHTDLLFNQLYDKFSENSVAK
GIFLECLETYILRDQLVGLTPQVMKDLLIHFQDRNMMDSVEACIVHMDVTSLDIQQIVLM
CWENHLYDAMIYVYNSGMNDFISPMEKLFKVIAPPLSAGKSLTDEHVVMGNKLLVYISCC
LAGRAYPIGDILDDLVTQVKHQVFEFLIRLHSPEALPNEEVYPYVRTLLHFDTREFLNVL
ALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVN
RVLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFDENRLIFLAEKAKFHQICEFM
YERKHQYDKIIDCYLQDPVRKEEVFNYIHNILSIPGYSTEEKMSLWNKAMHHMEDLVSLN
PCKAADMVAIHFSEQLETVITKIQDPFLLFQFLRSFLNPREGVQVNPDVLQLNPDVSELY
IDLLCQYNPSQVTEILHILEHYRLEETIQITQKHKLHEASAYLLEKKGDVQGAFTVMLKI
LQTKLLVLTQEDETSKEQIPVKDVEDVLSETIALCQRTSHSLNQQQREAVWFPLLEAMMS
PQKLFSSTACQQYSEPLKCLTMLVLNSMATFISLPSILQRILQDPVYGKGKLGEIQGLVL
GMLDTFNYEQTLLETTTNLLNQDLHWSLCNLRASVTRGLNPKHDYCSICLQQYKRRQETA
DEIIVFSCGHLYHSLCLLNKECGIESNGQTTWTCYKCKSRNSGAQQIEATSALKKGRTSS
LAQMKVSPPKSSGRGEYGHKKPNSEPILDPQQAQAFDQLCRLYKGTSRLALLTELSRTRS
TEKPGPLNVSQSASSASSVFQNENFQLHLVPPPVIED
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggagggggaactgtccggagttccagaagacgaagatgcacacagctcttccgcaggt
cctcagagggatagcatcctagcagccgtagactatgtggaggtggagcccggtggagaa
gtgatagatgacaaagaatttgatattccacaagttgatacacctccaactttagaaagt
atcttgaatgagactgatgatgaagatgagtctttcattccggaggatgcttctctttta
aatttggaaaccattgacacatactcctgtgacacttcttctctggcaagctcagacagc
ggcgatcgcacacatctaaaaaggaagaaaaggctgcaggatgctttctctcggcatgga
tcggtgatgcgacattctcttcttaagggaatttctgcacaaattttgtctgcagcggaa
aaagtggatgccggtttaccaactgccatagctgtttcaaatctgatagctgtgggaact
tcacatgggcttgccttaatctttgatccaaatcaggctctgcgactctgtttgggcaac
accgcagttggtgcacagtatggtgccatttctgctttaagtatcaacaatgactgttca
agattactatgtggctttgcaaaaggacagattactatgtgggacctcgccagtgggaag
cttttacgatccataagtgatgcccatcctcccggaacggcaattctgcacattaagttt
acagatgacccaactcttgctatttgcaatgacagcgggggttcggtgtttgagctgaca
tttaagagagtcatgggggtcaggacctgtgaatcccggtgcctcttcagtggctccaag
ggggaggtatgctgcattgaacctctacatgcaaaaccagatttaaaagaacatcctatc
acacagtactctctactagcgatggcttcattaaccaagattcttgtgattggattgaaa
ccagctctgaaagtttggatgacgtttccatatggacgcatggatccatctagtgttcca
ctgttggcctggtattttactgctgtgcaaaatgtagttaatccaatgttggctttctgc
agaggtgatgctgttcatttccttctggtgaagagagatgaatcgggtgctatacatgtc
agcaaacaaaaacagctgcacctgcattatgacatcataaactttacttggatgaactca
cgaacggtggtgctcctggatagtgcagagaaactgcatgtaatagatcgccacagtcag
gaggagcttgagacaatcgaaatttcagagttccagcttgtttacaatagcagccacttc
aaatccttggccaccggaggcaatgttagccaggctctggcattggttggtgagaaagcc
tgttatcagtctatttgcagctatggcggtcaaatattctacctgggaacaaagtcagtt
catgtgatgctgctgagaagctggagagagagagtcaatcatctgcttaagcaagaacat
tttacagaagcactggcattagcatggtcattctacgaaggcaaagcaaaagctgtagtg
gggttgtctgctgatgtcagtaagagaaagggcgttgttggagatcagatggtcgaaatc
ctttttcagtttgcagaccgtgctttgaaaaaatgccctgaacagggtaaaatccaagtg
atggaacaacattttcaggacatggtgcctgtcatagttgattactgtctgctgctccaa
cacacggatcttttatttaaccagctgtatgacaagttcagtgaaaattctgtggctaag
gggatcttcctcgaatgtttggagacatacattttaagggaccaacttgtagggctcacc
ccacaggtgatgaaggatctgctcatccattttcaagacaggaatatgatggatagtgtt
gaggcttgtattgtgcatatggatgtaacaagccttgacatacaacagattgtcctcatg
tgttgggagaaccatctttatgatgctatgatctatgtgtacaacagcggaatgaatgac
tttatcagccctatggagaagcttttcaaagttattgcacctccgcttagtgctggcaag
tctctgacagatgaacatgttgtcatgggaaacaaacttcttgtgtacattagctgctgc
ttggctggtcgtgcctatcccattggcgatatccttgacgacctagtgactcaggtaaaa
caccaggtgttcgagtttctgattcgtctccactcaccagaagcgttgcccaatgaggaa
gtttacccttatgtgaggaccctactgcattttgacaccagggaatttctgaatgtgcta
gctttgacctttgaagattttaagaatgacaagcaagctgtagagtatcaacaaaggatt
gtggatattttactcaaggtcatggtggagaattcggattttactccatcccaagtggga
tgtcttttcactttccttgcacgccagcttgctaagcctgataatacgttatttgtaaac
agagtgcttttcgatcaggtgctcgaatttctctgcagcccagatgatgactccagacat
tcagaaagacagcaggttcttttggaacttctccaggctggtggtatagttcagtttgac
gagaacaggctgatatttttggcagaaaaggctaaattccaccaaatatgtgagtttatg
tatgaaaggaagcatcagtacgacaaaattattgattgctatttacaggacccagtaaga
aaggaagaggtattcaactatatccataatattttatctattcctggatatagcactgaa
gagaaaatgtctttgtggaataaagctatgcatcatatggaggaccttgtatctttgaac
ccatgcaaagctgctgacatggttgccatccatttcagtgagcaacttgaaacagtaatt
acaaagatccaggacccgtttctcctttttcagttcctgaggagctttcttaatccaagg
gaaggtgtacaagtaaacccggatgtattgcagctaaatccagatgttagtgaattgtac
attgatctgttgtgtcaatacaatcctagccaagtgactgagatactgcacatcctagag
cattacaggctggaggaaactattcagattacccaaaaacataagctacatgaagcatct
gcctaccttttggagaagaaaggagacgtccagggagcatttaccgttatgcttaagata
cttcagacaaagctcttagtgctcacgcaggaagatgagacatcaaaagaacagatccca
gttaaggatgttgaagatgtactatcagagactattgcactttgtcaaaggacgtcacac
agtctaaaccagcaacaacgagaggctgtgtggtttccactgttggaagccatgatgtca
ccccagaagctatttagctccacagcatgtcaacagtattccgaacctctgaaatgtttg
acaatgctggtgctgaacagtatggcaacatttatcagtctgccttcgattttacagaga
atcctgcaagatccagtttatgggaaaggaaaactgggagaaatacaaggactggtactt
gggatgctggatactttcaactacgagcaaactctcttagagacaactacaaacctctta
aatcaggatttgcactggtccctctgtaatttacgtgcttcagttactagaggtctgaac
ccaaaacatgactactgtagtatttgtctgcaacaatacaaaagaagacaagagacggct
gatgaaatcattgtctttagctgtggccacctttaccattcgctctgcttactgaataaa
gagtgtggaatcgaatcaaatgggcagacaacatggacttgctataaatgtaaatctagg
aacagtggagcccaacaaattgaagctacatctgcattaaagaaaggaagaacatcgtca
cttgctcagatgaaagtgtctccgcctaaatcttcgggtagaggggagtacgggcataaa
aagcccaattctgagccgatcctggatccccagcaagcccaggccttcgatcaactgtgc
cgtttgtacaaaggaacttccaggctggctctgctgaccgagctgtcccggacacgcagc
accgagaaacccggcccgctgaacgtctcgcagagtgcctcatctgccagcagcgtcttc
cagaatgaaaacttccagctccatctcgttcctccgccagttattgaagactag
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