Pleurodeles waltl (Iberian ribbed newt): 138285633
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Entry
138285633 CDS
T10800
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138285633 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138285633 (SF3B1)
03036 Chromosome and associated proteins [BR:
pwl03036
]
138285633 (SF3B1)
Spliceosome [BR:
pwl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138285633 (SF3B1)
Complex B
138285633 (SF3B1)
Complex C
U2 SnRNP specific factors
138285633 (SF3B1)
Chromosome and associated proteins [BR:
pwl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
138285633 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
138285633
NCBI-ProteinID:
XP_069081931
LinkDB
All DBs
Position
3_1:1784534372..1784991672
Genome browser
AA seq
1310 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQSKKIALATEEDQGVGLDSTGYFDQEIYGGSDNRFVGYLTSI
AANEQEDDDDDYSSTNLLEQKKPGYHAPVALLNDIPQSTEQYDPFVEHRAPKIADREDEY
KKQRRMMIISPERHDPFALGGKTPDPTMNVRTFKDVMYEQHLSKEEREIKQQLAEKVKSG
DLKVVNGTAASQPPSKRKRRWDQTADQTPGTPGSTPKKMSSWDQAEVTPGHTPSSLRWDE
TPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGASSSARKNRWD
ETPKTERDTPGHGSGWAETPRTDRGGESIGETPTPGASKRKSRWDETPASQMGGSTPVLT
PGKTPIGTPAMNMATPTPGHMMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKV
LPPPAGYVPIRTPARKLTATPTPLGGLTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQY
FDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQ
ILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGR
EIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKS
KKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAE
AATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILI
REFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLV
DTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLID
GILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL
ISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIK
DLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIR
RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN
EYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQH
MSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGL
FHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagacattgaagcacagataagagaaattcaaagc
aaaaaaattgcacttgctacggaagaagaccagggagtgggcctagattcaactggatac
tttgaccaagagatctatggtgggagtgataataggtttgtgggatatctgacgtccatt
gctgcaaatgaacaggaagatgatgacgacgactactcttctactaatttacttgaacaa
aagaagcctgggtaccatgctcctgttgctttacttaatgatattccacaatcaacagaa
cagtatgatccctttgttgagcaccgtgcaccgaagattgcagatcgggaagatgaatac
aaaaagcagcggcggatgatgatcatttcgcctgagcgccatgatccatttgcacttgga
ggcaagactcccgatcctacaatgaatgttagaacgttcaaggatgtgatgtatgaacaa
cacttatcaaaagaagagagagaaattaaacaacaattagctgaaaaagtaaagtctggc
gatctgaaagttgtcaatggtacagcagcatcccaaccaccttcaaaacgtaaacgacgt
tgggatcaaacagctgatcaaactcctgggacacctggctccacaccgaagaagatgtcc
agctgggatcaagctgaggtcactcctggacataccccttcttccctacggtgggatgaa
actcctggtcgtgcaaagggtagtgaaactcctggtgcaacaccaggctccaaaatctgg
gatccgacacccagccatacaccagcaggtgctgcaacccctggccgtggtgacacacct
ggccatgctactcctggtcatggtggggcttcttcaagtgcacggaaaaaccgctgggat
gaaactcctaaaactgaaagagatacacctggacatggaagtggttgggctgagactccc
cgcacagatcgaggaggggaatctattggagaaactccaactcctggtgcaagtaaaaga
aaatctcgttgggatgaaacaccagctagccaaatgggtggcagcactccagttttgaca
ccaggcaaaacaccaattggaacaccagccatgaacatggcaactcctacaccaggccac
atgatgagcatgactcccgagcagctacaggcttggagatgggagagagagattgatgaa
agaaatcgcccactttcggatgaagaactggatgccatgtttccagagggttataaggtc
cttcctcctcctgctggatatgttcccatacgtacaccagcacgtaaactaacagcaaca
ccaaccccactgggaggattaactggattccacatgcagaccgaagataggacaatgaag
agtgttaatgaccagccttctggaaacctgccatttttaaagccagatgatatccagtat
tttgataaattactggttgatgttgatgaatcgacattaagtcccgaagagcagaaagag
agaaaaatcatgaaactacttttgaaaattaaaaatggcactccaccaatgagaaaggct
gctctgcgtcagatcactgataaagcccgtgagtttggagcaggcccgttattcaaccag
attctgcctctgctgatgtctcctacacttgaagatcaagaacgtcacttactggttaaa
gttattgacagaattttatacaaattagacgacttggtccgaccgtatgtccacaagatt
cttgtggttattgagccactgcttattgatgaagattactatgccagagtggaggggaga
gaaattatttctaacttggctaaggctgctgggttggccaccatgatttcgactatgcga
cctgatatcgacaacatggatgaatatgtccgtaatacaacagcccgagcttttgccgta
gttgcttctgctttgggcatcccatctctcttgcctttcttgaaagcagtttgtaagagc
aaaaagtcttggcaggccaggcacactggtatcaaaatcgtacagcaaattgcaattcta
atgggctgtgctatcttacctcatcttagaagtttagttgaaattattgagcacggtttg
gtggatgaacaacagaaggttcgtacaatcagtgctttggctattgcagctttagctgag
gcagctactccttatggaattgaatcgtttgactctgttctcaagcccctgtggaagggt
atccgtcagcacagaggaaagggtcttgctgctttcctgaaagctattggttaccttatt
cccttgatggatgcagaatatgcaaactactataccagagaagtgatgctgatcctgatc
agagagtttcagagtcctgatgaagaaatgaagaaaattgtgttaaaggtggttaagcag
tgttgtggcacagatggtgtggaggcaaactatatcaaaacagaaatccttcctcccttc
ttcaagcacttttggcaacacagaatggcattggatcgaagaaactatagacagttggtc
gataccacagtggagcttgcaaataaagtgggagctgctgaaataatttccagaattgtg
gatgacttaaaagatgaagctgaacagtacagaaaaatggtgatggaaactattgagaag
atcatgggaaaccttggagcagcagatattgatcacaaacttgaagagcagctcattgat
ggtatcctctatgcctttcaggaacagaccacagaggactctgtgatgttgaatggcttt
ggcacagtggttaatgctcttgggaagcgtgtaaagccatacttgcctcaaatttgtggt
acagtgctatggcgtttaaacaacaaatctgcaaaagtacgacagcaggctgctgacttg
atttctcgcactgcagtggtcatgaagacttgtcaagaggaaaagctcatggggcatttg
ggtgttgttctttatgaataccttggagaagaatatcctgaagtattgggcagcattttg
ggtgcacttaaagccattgtgaacgtaataggtatgcacaagatgacaccaccaatcaaa
gatctccttccaagacttacacctatcttgaaaaacaggcatgagaaagtccaagaaaat
tgcattgatctggttgggcgtattgctgacaggggtgctgaatatgtttctgcaagagaa
tggatgaggatttgttttgaactgctggaattattgaaagctcataagaaagctatacga
agagctacggtgaacactttcggttatattgcaaaagccattggacctcatgatgttttg
gcaactctgttgaacaacttaaaagtacaagagagacagaacagagtgtgcaccacagta
gctattgctattgtagctgaaacatgttcgcctttcactgtccttcctgcccttatgaat
gagtacagggttcctgagctcaacgtacaaaacggtgtactaaagtcactctccttcctt
ttcgagtatattggtgaaatgggaaaggattacatttatgctgtgactcctttgctggaa
gatgctttgatggacagagatcttgtgcatagacaaacggccagtgcagttgttcaacac
atgtcacttggtgtctacgggtttggctgtgaagattctcttaatcacctgttgaattat
gtctggccaaatgtttttgaaacctctcctcatgtaatccaagcagttatgggtgctctt
gaaggccttagagttgctattggaccatgcagaatgttgcagtattgtttgcagggcttg
ttccatccagccagaaaggtcagagacgtctattggaaaatatataattctatttatatt
ggctcacaggatgcacttattgcgcattatcccagaatctacaacgatgaaaagaacacc
tacattcgatatgaactagactacatcttgtaa
DBGET
integrated database retrieval system
