Pleurodeles waltl (Iberian ribbed newt): 138286356
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Entry
138286356 CDS
T10800
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138286356 (YTHDC2)
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138286356 (YTHDC2)
Spliceosome [BR:
pwl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138286356 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_22
AAA_19
nSTAND3
Ank
ATPase
AAA_23
AAA_16
AAA_29
AAA_7
SRP54
Motif
Other DBs
NCBI-GeneID:
138286356
NCBI-ProteinID:
XP_069082615
LinkDB
All DBs
Position
1_1:complement(635161626..636160994)
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AA seq
1427 aa
AA seq
DB search
MSRPSSVSPRSNSALSAPAASGKAKGLKDIRVDEEVKIAVNIALERFRYSDQKETEFPSS
LTSTERAYVHRLCQSVGLVSKSKGKGANRFLTVRKKDGSEMTRAMMTCNLTHNTKHAVRS
LIQRFPVTNKERAELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDAF
RQVLPVFEKHEEIVQIIGENKVVLIVGETGSGKTTQIPQFLLDDSYKNGIPCRIFCTQPR
RLAAIAVAERVAAERGEKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLST
VTHVIVDEVHERDRFSDFLLTKLRDILQKHSALKLILSSAALDVNLFLRYFAGCPVIYIQ
GKPFEVKELFLEDILRTTGYTNKEMLKYKKEKQREEKQRTTLSEWYTVQDNNLKPESQRH
RTVLNVTEEYDLLDDGGDTVFSQLTEKDINCLEPWLIKEMDACLSDIWLNKDVDAFAQLF
HLILTENVSVDYRHSETSATPLMVAAGRGFLSQVEQLISMGANVHSKSSNNWMALDWAKH
FGQSEVVDLLESYSASLEFGNLDESSLVQSDGSNLSAEDRELLKAYHHSFDDEKVDLDLI
MHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFMLHSNMQTSD
QKKVLKNPPSGIRKIILSTNIAETSITVNDVIFVIDSGKVKEKSFDALNDVTMLKMVWIS
KASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPINCP
IADFLMKAPEPPPSLIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAV
VLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQAWQK
ARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWA
VVKAALVAGMYPNLIHVDRENVLLTGTKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQA
LPTNWLTYDEMTRAHRIANIRCCSVVTPVTIAIFSGPARLPSTALQEPSTFRVDGVTNDS
SDSEMEDRTTANLATLKLDEWLTFKVDPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVD
EATIRALIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLSSSWRSNNSRKSSVESEFSD
EPSTTERILAKSPSSVLHQQAKYKERGILNPKRSSDDRSDQSSVKSTDSSAYPSPCASPS
PPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESST
VYLVFSVQGSGHFQGFARMCSEIGREKSQDWGSTGLGGVFKVEWIRRESLPFQFAHHLMN
PWNDNKKVQISRDGQCSHLFQELEPQVGEQLLQLWDRIPVVDKSVAH
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggcctagtagtgtttctccgagatcgaacagtgccctgtctgctcccgctgct
tctggaaaagctaagggactaaaggacatccgggtagacgaagaagttaaaattgctgtg
aacattgccttagagagatttcgatatagtgatcaaaaagaaactgaattcccatcttcc
ttgacgagtacggagagggcatatgtacatcgactatgccagtctgttgggttggtctcc
aaaagtaagggaaaaggtgcaaacagatttttaaccgtaaggaagaaagatggctccgag
atgacccgtgcaatgatgacctgcaacttgacacacaatacgaaacatgctgtcaggagc
ctgattcaaagatttcccgtcacgaataaggaacgtgcagaacttctacccaaaacagag
cgaggaaatgtgtttgctgttgaagctgagaacagagaaatgagcaagacaagtgggcga
ctcaacaatggcatacctcagattccagtgaaaaggggagagtctgaatttgatgccttt
cgacaagtgctacctgtgtttgaaaagcatgaagaaattgtccagattattggtgaaaat
aaagtggttttgattgttggagaaacaggctcggggaaaacaacacagatcccacagttc
cttctagatgacagctataaaaatggcattccctgtcgcatattttgcactcagccaagg
cgtttagcagccattgccgtggctgaacgagtagctgctgaaagaggagaaaagattggt
cagactattggttaccagatacgactggagagcagggtgtccccgaaaacacttctaacg
ttttgtacaaatggagtactgctgcgcacactgatggcaggcgacagcacactgtctaca
gtcacgcatgttattgtggatgaagtccacgagagggatcgctttagtgacttcttatta
acgaagttgagagacatactccaaaagcattctgctctaaagctgattctgtccagcgct
gccttggatgttaatctgttcctcagatattttgcaggttgcccagtcatctatatacaa
gggaagccttttgaagtaaaggaattgttcctggaagacatattacgcacaacgggttac
acaaacaaagagatgctaaagtacaaaaaggaaaaacaacgcgaggagaaacaacggact
acactttctgaatggtatactgttcaagacaacaaccttaaacctgaaagtcagagacac
aggacagtgttaaatgtgacagaagaatatgatttgctagatgatggcggtgacactgtg
ttcagtcagttgactgaaaaggatataaattgcctggaaccttggttgatcaaagaaatg
gatgcttgtctttctgatatatggctgaataaagacgttgatgcctttgcacaattgttt
catctcattctaactgaaaacgtcagtgttgactacagacacagtgaaaccagtgccact
ccactcatggttgctgcaggccgaggtttcttaagtcaagtggaacaattaatcagtatg
ggagctaacgttcacagcaaatcctcaaataactggatggcattggactgggcaaaacac
tttgggcaaagtgaagttgttgaccttctggagtcgtatagtgcctcactggaatttgga
aatctagatgaaagttcccttgtacagtcagatggaagcaacttaagtgcagaagacagg
gaacttctgaaagcttaccatcacagttttgatgatgagaaagtagatcttgacctcatc
atgcaccttctgtacaatatttgtcacagctgcgatgctggggcaattttgattttcctg
cctggatacgatgaaattgttggactcagggaccgtatcttgtttgatgataagcggttt
gcagataacgcacataggtatcaggtttttatgcttcactccaacatgcagacatccgat
cagaagaaggtgctgaagaacccacctagtggcattcgtaaaataattctttctacgaat
attgctgaaacaagcattacagtgaatgatgtaatatttgttattgattcaggcaaggtt
aaagagaaatcatttgatgcattaaatgatgtgaccatgctcaaaatggtatggatttca
aaagcgagtgcaattcaaaggaaaggaagggcaggacgttgtagacctggaatctgtttc
cgtttgtttagccgactgagatttcaaaatatgcttgaattccaaactcccgaactgctg
agaatgccactgcaggaactgtgtttgcacacaaaactgcttgcacctattaactgccca
attgcggattttcttatgaaagccccggaaccgcctccctctttaatagtcaggaatgct
gtacagatgctgaagactatagatgctatggatacttgggaggatctaacggaactcgga
tatcatcttgcagacttgcccgtggagccacacctgggcaaaatggtgctttgtgctgta
gttctgaaatgtctggatcctatccttaccattgcttgcacattggcgtaccgagatccg
tttgtcttgcctacacaggcatcacagaaacgagctgctatgctttgcagaaagcgcttt
acagccggaacatttagtgaccatatggctttactcagagcttttcaggcttggcaaaaa
gcaagaagtgatgggtgggagagagcattttgcgagaagaacttcctctcccaggccaca
atggaaatcataattggaatgcgaactcagttgctgggtcaacttagagcatcaggtttt
gttagagcgagaggtggaggtgatattcgagatgttaacactaattctgaaaactgggca
gtagtgaaagctgcacttgtggctgggatgtacccgaacctcatccatgtagacagagaa
aatgtgctgctcactggaacaaaagagaaaaaagtgcgatttcatcctacttcagttctc
agccaaccacagtacaaaaagattcctccagcaaatggtcaagcagcagcaattcaagcg
ctcccaacaaactggcttacatatgacgagatgaccagagctcacaggattgcaaatatt
aggtgctgttctgttgtgacaccagtaacaatcgctatattttctggaccagctaggttg
ccaagtacagctctgcaagagccttcaacttttagagtggatggtgttaccaacgacagt
agtgacagtgaaatggaggacaggactactgcaaatctggccacactgaagctagatgaa
tggctgacttttaaagtagatcctgaggctgctagcctgcttctgcaactacgtcagaag
tggcatagcttgtttttgcgtcgtatgcgtgccccatcgaagccttggtctcaagttgat
gaagcaaccatcagagccctgatagctgttctaagcactgaagagcagtcagcagggtta
cagcagccctcaggcattgggcaaagaccaagacccatgtcttcagaggagcttccgttg
tcatcttcttggcggtctaacaacagcaggaaaagttctgtagaaagtgaattttctgat
gagccatccactacagagaggatccttgcaaaatctccatcctccgtgcttcaccagcag
gcaaagtacaaagaaagaggaattctgaacccaaaacgaagctctgacgataggtcggat
caatcatctgtgaaatcaacagacagtagtgcataccctagtccctgtgcaagtccatct
ccgccctcgtcgggaaagggatcaaagtctccatcaccaagacccaacatgccagtacgt
tactttataatgaagagcagtaacctacgaaatcttgagatatcgcagcaaaaaggaatc
tggtctacaacacctagcaatgagcgtaagctaaatcgtgctttttgggagagcagcaca
gtttatctggtgttttctgttcaaggatccggacattttcagggttttgcaagaatgtgt
tcagaaattggacgagagaaaagtcaggactggggatcaacgggcctaggcggagttttc
aaggtggaatggatcagaagagaaagcctcccctttcagtttgcacaccatttgatgaac
ccatggaacgacaataagaaagtgcaaattagcagagatgggcagtgctcgcatcttttt
caggagttggaaccacaggttggagaacagttactacagctctgggatcgcattccagtc
gtagataagagtgtagctcattga
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integrated database retrieval system
