Pleurodeles waltl (Iberian ribbed newt): 138286467
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Entry
138286467 CDS
T10800
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
138286467 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwl03400
]
138286467 (LIG3)
Enzymes [BR:
pwl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138286467 (LIG3)
DNA repair and recombination proteins [BR:
pwl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
138286467 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138286467
NCBI-ProteinID:
XP_069082862
LinkDB
All DBs
Position
3_2:54233605..54658515
Genome browser
AA seq
1010 aa
AA seq
DB search
MPALIRLLIQPIIRTLCRKDFHAQLQLVLQSRFSYAIHPFVRSLHSGVPPLPLFLTLRQI
PHPGNNSVYHTYHYLIRWACSFPDDMAEQRYCVDYAKRGTAGCKKCKEKIMKGMVRIGKV
VPNPFTESGGDMKEWYHVKCIFEKLAKARATTKKIEDITDLEGWEELQDPEKELINQQVT
ELASKVGATPKKTPPTSKKSPGAEKSLVTAEAAPSPSPRKFPGFTAKPTTPSPSVPHVNS
MSAKRCDPKHKDCSLREFRKLCTMVSDKPSYNVKTQIIQDFLQKGTGGDGFHGDVYLTVK
LLLPGVIKSVYNLNDKQIVKLFSRIFSCNQEDMVRDLEQGDVSETVRIFFDESKSFPPAT
KSVLTIQEVDDFLMKLSKLSKEEEQQKALEEIACRCTSNDLKCIIRLIKHDLKMNAGAKH
VLDALDPNAYDAFKASRNLHDVVERVLLNQQESEKVPGLKRILSVKASLMTPVQPMLAEA
CKSVAYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPKA
FPGGTSIILDSEVLLIDTNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGVSLMDR
PLHERRKFLHDNMVEIPNRILFSEMKHVTKAADLADMITRVIREGLEGLVLKDLKGTYEP
GKRHWLKVKKDYLNEGAMADTADLSVLGAFYGQGSKGGMMSVFLMGCYDPDSQKWCTVTK
CSGGYDDACLARLQNELDVIKISKDPAKIPAWLKINKNYYPDFIIRDPKKAPVWEITGAE
FSKSEAHTADGISIRFPRCTRFRDDKDWKTATNLHQLKELYQLSKETSDFSVMAASSQDE
DGSSENSSRENENNSRPPTPHSTPKPAPGKSPAKAKKQEGPKLPPQKKKADEQQKAEKRK
SPATSSEPTKKVKISDPSHRNGHSKPVSAESSKTLLDIFTGVKLYLPPSLEDYNKLRRYF
VAFDGDLVPDFDTSAATHVMGSIDDNPSAKQVTPGWIWKCIQKRKLIAPC
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcactgatcagattactcatccaacccattatacgaacattgtgccgaaaggac
tttcacgcacagttgcaattagtactgcaaagtcgtttctcatatgcaatccatccgttt
gtcagatctttacattccggggtcccaccactccctctgtttttgactttgagacaaata
ccccaccctggaaataattctgtttatcacacttatcactatctaatccgttgggcctgc
agcttcccagacgatatggcagagcaacgctactgtgtggactatgctaagcgtggaaca
gcaggctgtaaaaaatgcaaggagaagatcatgaagggaatggtgcgaatcgggaaggtg
gtgcctaacccattcacagaatctgggggtgacatgaaggagtggtatcatgtcaagtgc
atctttgaaaagctggcgaaggcacgagccaccactaaaaagattgaggacattacagac
ctggaaggctgggaggagctgcaagatcctgagaaagaactaataaaccaacaggtcaca
gaacttgcatctaaagtaggagccactcctaagaagacaccacccacaagtaaaaaatcg
cctggtgctgagaaatcactggtgaccgcagaagcagcacccagccccagtcctcggaaa
ttccctggatttacagcaaaaccaacaacaccatctccaagcgtcccacacgttaacagc
atgtctgcaaagcgctgcgacccaaagcacaaggactgctccttgcgagagtttcggaag
ctatgcacaatggtttctgacaagccaagctataatgtcaagacccagatcatccaggac
ttcctgcaaaagggcacaggaggagatggttttcatggtgatgtttacctgactgtcaag
ttactgttgccaggcgtgattaagagtgtctataacctaaatgataagcaaattgtgaaa
ctgttcagtcgcattttcagttgcaatcaagaggacatggtgcgggacctggagcagggg
gatgtgtcggagacggtgcgtatcttttttgatgaaagcaaatctttcccaccggcaaca
aaaagtgttctgacaatccaggaggtggatgactttttgatgaagctatctaaattatca
aaggaggaggagcagcagaaggcactggaggagattgcctgcaggtgtacctctaatgac
ttgaagtgcatcattcggctgataaaacatgatctgaagatgaatgctggtgccaaacat
gtgttagatgccctggatcctaacgcatacgatgctttcaaggcttcaaggaatctgcat
gatgttgtagaacgtgtcctactgaatcaacaagaatctgagaaagtgccaggtttgaag
cggatactaagtgtgaaggcctccctcatgacccctgtgcaacctatgctggctgaagct
tgcaagtctgttgcctatgccatgaagaagtgccccaatgggatgtactctgagatcaaa
tatgacggtgagcgtgtccaggtgcacaagaatggtgaccacttcagctacttcagccgc
agcttaaagcctgtgctccctcataaggtagcacacttcaaagacttcatccctaaagct
ttcccaggaggaactagcattatcctggactctgaagttcttttgattgatacgaacact
ggaaaacctctgccttttgggacactaggtgtacacaagaaagctgctttccaggatgcc
aacgtctgcctgtttgtctttgactgcatttacttcaatggtgtcagcttgatggacaga
cctttacatgagcgtcggaagttcctacatgataacatggttgaaataccaaaccggata
ctcttctctgagatgaagcatgtcactaaagctgcggacctggccgacatgattacacga
gttatccgtgaggggttggagggccttgtcctgaaagacttaaagggtacctatgaacca
gggaagcgccattggttgaaggtgaagaaggattacctgaatgaaggtgccatggcagac
actgctgatctttcagtcctgggagcattttatggacaaggcagtaaaggtggtatgatg
tcggtattccttatgggctgctatgacccggattctcagaagtggtgtactgtcacaaag
tgttctgggggatatgacgatgcctgcttggcccgacttcagaatgagctggacgtgata
aagatcagcaaggatccagcaaaaatacctgcttggttgaaaatcaacaagaactactat
ccagatttcatcatccgggaccctaagaaagcgccagtgtgggagatcacgggagctgag
ttctcaaaatcagaagcacacactgctgatgggatctccattcgtttccctcgttgcacc
cgtttccgtgacgacaaggactggaaaacagccaccaacctgcaccagttaaaggaactg
taccagctctccaaggagacgtccgacttcagtgtcatggctgcttcttctcaggatgag
gatggttcatctgaaaacagtagccgggagaatgagaacaattcaaggcccccaacccct
catagtaccccaaagccagcccctggaaagtctcctgctaaagctaaaaagcaggaaggc
cccaagctgccgcctcagaagaagaaagcagatgagcagcagaaggcggaaaagcggaaa
tccccagcaacctcatcagagcccactaagaaggtgaaaatatctgaccccagtcatcgt
aatggccacagcaaacctgtgtcagcagagtcttcaaagaccctgctggacatattcaca
ggtgtgaagctttaccttccaccttctctggaggattacaacaaactccgacgctacttt
gttgcttttgatggagacttagtgccagacttcgatacatcagctgcaacacatgtgatg
ggcagcatagatgataacccaagtgccaaacaagtcacccctggctggatctggaagtgt
attcagaaacgaaagctaattgcaccatgctga
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