KEGG   Pleurodeles waltl (Iberian ribbed newt): 138286534
Entry
138286534         CDS       T10800                                 
Symbol
RFC2
Name
(RefSeq) replication factor C subunit 2 isoform X1
  KO
K10755  replication factor C subunit 2/4
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03030  DNA replication
pwl03410  Base excision repair
pwl03420  Nucleotide excision repair
pwl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pwl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138286534 (RFC2)
   03410 Base excision repair
    138286534 (RFC2)
   03420 Nucleotide excision repair
    138286534 (RFC2)
   03430 Mismatch repair
    138286534 (RFC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pwl03032]
    138286534 (RFC2)
   03036 Chromosome and associated proteins [BR:pwl03036]
    138286534 (RFC2)
   03400 DNA repair and recombination proteins [BR:pwl03400]
    138286534 (RFC2)
DNA replication proteins [BR:pwl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    138286534 (RFC2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    138286534 (RFC2)
Chromosome and associated proteins [BR:pwl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    138286534 (RFC2)
DNA repair and recombination proteins [BR:pwl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     138286534 (RFC2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    138286534 (RFC2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 nSTAND_NTPase5 AAA_lid_RFC1 AAA_14 AAA_16 Viral_helicase1 Mg_chelatase Rad17 AAA_11 AAA_assoc_2 RuvB_N DNAX_ATPase_lid AAA_19 nSTAND3 AAA_24 MipZ AAA_18 AAA_5 AAA_28 ABC_tran AAA_25 AAA_23 AAA_30 NTPase_1 MeaB SLFN-g3_helicase RNA_helicase FtsK_SpoIIIE DNA_pol3_delta_C DUF815
Other DBs
NCBI-GeneID: 138286534
NCBI-ProteinID: XP_069082999
LinkDB
Position
3_2:96751357..96781609
AA seq 363 aa
METEEMETGPSTAPSEAPVTQQSKATPSTAPPAASGSKGTSGSFDLPWVEKYRPIKLHEI
VGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASND
RGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALA
CNASDKIIEPIQSRCAVLRYTKLTDAQVLARLMKVVEMEKVQYSDDGLEAIVFTAQGDMR
QALNNLQSTQSGFGFVNSTNVFKVCDEPHPLLVKEMIQHCVEGNIDEAYKIVAHLWKLGY
SPEDIIGNIFRVCKTFQMPEFLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTVP
TAS
NT seq 1092 nt   +upstreamnt  +downstreamnt
atggagaccgaagagatggagacgggtccgagcactgcaccgtcggaggcgccagtgacc
cagcagagtaaggcgacaccgtccacagcacctcccgccgcctccgggagcaagggcact
tccggttcattcgatttaccctgggtggaaaaatacaggccgataaagctgcacgaaata
gttggaaatgaagagactgtcagcaggttagaggtgtttgcaagagagggcaatgtacca
aatatcattattgctgggccgccaggaactgggaaaacaacaagtatcctgtgtttggct
cgtgctcttttagggccagcactaaaagatgctgttctggagcttaatgcatccaatgat
agaggcattgatgtagtgagaaacaaaattaaaatgtttgctcagcagaaagtcacactt
ccaaagggccggcataaaatcatcatcctggatgaagcagacagcatgactgacggagcc
caacaagcattaagaaggacaatggaaatctattcaaaaacaactcgctttgctcttgct
tgcaatgcttctgataaaattatagagcccatacagtctcgctgcgcagttctgcgctac
acaaagctgacagatgctcaggttcttgcaaggcttatgaaggtggtcgagatggagaaa
gttcagtattcagatgatggcctggaagccattgtctttacagcacaaggtgatatgaga
caggctttgaacaatttacagtccacccaatctggatttggttttgtcaacagtacaaat
gtctttaaggtttgtgatgagcctcatccccttcttgtgaaagagatgatccagcactgt
gtggagggcaacattgatgaagcttacaagattgttgcccatctctggaagctcggctat
tctcctgaagatattattggcaacatcttcagagtctgcaaaacatttcaaatgccagag
tttctcaaactggagttcataaaggaaattggttacactcacatgaaaatagcagaaggg
gtgaactcacttttgcaaatggctggacttcttgccaggctttgtcaaaaaactgttcca
acagcaagttaa

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