Pleurodeles waltl (Iberian ribbed newt): 138287446
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Entry
138287446 CDS
T10800
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138287446 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138287446 (PATL1)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138287446 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
138287446 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
CASTOR1_ACT-like
Motif
Other DBs
NCBI-GeneID:
138287446
NCBI-ProteinID:
XP_069083977
LinkDB
All DBs
Position
4_1:complement(129168075..129429001)
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AA seq
784 aa
AA seq
DB search
MFRYESLEDCPLDEEETFQVLGEEDEEIDQFNDDTFGAGAIDDDWREEHERLAEMEDKPS
TVEGMAAPTLKSGSVPIREEAGGLLEGRGENLAQSLRKLVIDSDLEDPAVMSAIHSRTRP
PMQLSRSLNSSIWDSPAILRHMRAPMLSEDMPPSSIMQEYDLAHKLQQSREEPERDLSER
ALPRRSTSPVIGSPPVRAVPIGTPPKQGVMGHFNQQQVLCPKAVHVRAPVQQRFTPTSYN
DQMSPNPLCGVSNSSLLGHPFSGNVTPVLTPLQRAQLLGGAQQQAAVVAAGRMSPSQYAR
VSGLMGTPLASVNPKLLQSRVGQMMGPAPGFRAFFGAPPPPAPLAPPQSHLQNLRPQPQM
FRPDTTYLHPQHRRLLSQRQEYRNQHRNLNGAGGDRGHRGSHQDQIRKDPYANLMMQREK
LWVSKIQMMQLQSTDPYLDDYYYQNYFEKIEKLAATEDTHSEGPKKERTKLITPQVAKLE
HAYKPVQFEGSLGKLTVSSVNNPRKMIDAVISSRTEDDETKEKQVRDKKRQTLAIIEKTF
TLLLDVEDYERRYHQSPMEEQPGLLDERKHKIVEMYENLKGKSLGHERPNDDLFVQIMCI
RKGKRMVARILPYLSVEQAASLVSSTAHNLSFLMKKDAQDEVLPCLLRPCTLVVSQLPSE
AVTSILQQILNLPQNIASLQQPETSNPHFISVLQNRFGLSLLYQILSRGEQILSSVTAAK
DLMQDNLWTDLVFRVTRELLRVPANSLATALCIPSNLQSLFSRYVDRQNLNLLETKLKLV
PGTC
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatacgagtccttagaggactgtcccctggatgaagaagaaacatttcaggtg
cttggagaagaagatgaagagatcgatcagttcaacgatgacacctttggagctggtgca
attgatgacgactggcgggaggaacatgaaaggttggcggagatggaggataagccttca
acagtggagggcatggctgctcccaccttgaagagcggaagtgtcccgatccgtgaggag
gcaggaggtctactagagggacgcggggagaacctagcccagagtctacgtaagcttgtg
attgacagcgacttggaagatccagctgtcatgagtgccatccattcacgtacccgccct
cccatgcagctctcgcgaagcctcaattccagcatttgggacagtccagcaatccttcgg
cacatgcgagccccaatgctttctgaggacatgcccccctcatccatcatgcaagagtac
gatttggcccataaactgcaacaaagcagagaggagccagagagagatctgtctgagcga
gcattgcccaggcgctctacctctccagttataggcagtcccccagtgcgagcagtgccc
atcggaactcctccaaaacagggagtaatgggacatttcaatcagcaacaggtcctttgt
ccaaaagctgttcatgtacgtgctcctgtacagcagcggttcacccccacttcatataac
gaccagatgtccccgaacccattatgtggcgtctcaaattcctcgctgcttggtcaccca
ttctctggcaatgttactcctgttcttacaccacttcagcgtgcacagctgttaggtgga
gcacaacaacaggcagcagttgtagcagctggacgaatgtctcctagccaatatgctcgt
gtttcaggactcatgggcacgcctcttgcctctgtcaaccctaagcttctgcagtccaga
gttgggcagatgatgggaccagcccctggattccgggctttctttggtgctccgcctcca
cctgctccgttggcacctccccaatctcacctacagaacttgagaccacagccacaaatg
ttccgcccggacacaacatatcttcatccacaacatcgacgcctcctaagccaaaggcag
gagtatcgaaatcagcaccgcaacctgaatggagcaggaggggacaggggacaccgtgga
tctcaccaggaccagatacggaaggacccttacgccaacctcatgatgcagcgagagaag
ctatgggtatccaagatccagatgatgcagctgcagagcactgacccgtacttagacgac
tattactaccagaactacttcgaaaaaattgagaagctggcagccacagaggacacccac
agtgagggtccaaagaaggaacgaacaaagctcattacaccacaggtggctaagctggaa
catgcctacaaaccagtgcagtttgagggctctcttggaaaactcacagtctccagtgtt
aacaacccccgcaagatgattgatgctgtgatatcatcacgtactgaagatgatgaaaca
aaggagaagcaagtgcgggacaagaaacgccagaccctggccatcattgagaagaccttc
acgctcctcttggatgttgaggactatgaacggcgctaccatcagagtcccatggaggaa
cagcctgggttgctcgacgaaagaaagcacaaaattgttgagatgtacgagaacctgaag
gggaagtctttgggacatgagaggccaaatgatgacctttttgtccagataatgtgcatc
cggaaaggaaagcgaatggtggcccgcatccttccttaccttagcgtagagcaggctgca
tcactcgtcagctccacagcacataacctgtctttcttgatgaaaaaggatgcccaggat
gaggtgctgccctgtcttctaaggccatgcactcttgttgtttctcagctgccatcggag
gcagtcaccagcattcttcagcagattttgaatctacctcagaacattgcttccttgcag
cagccagaaacctcaaatcctcacttcatatcagtgctccagaacaggtttggactgtca
ttattgtaccagatcctgtccagaggagaacagattcttagttctgtgacggctgctaaa
gacctaatgcaggacaacctctggactgatcttgtatttcgagtaacccgggaactcctt
cgtgtcccagcaaactctttggcaacggcactgtgcataccctctaacctccagtccctc
ttctcacgctatgtggacaggcagaacctgaacctgctggaaaccaagctcaagttggtg
ccaggaacatgctaa
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