Pleurodeles waltl (Iberian ribbed newt): 138287480
Help
Entry
138287480 CDS
T10800
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pwl03016
]
138287480 (RTCB)
Enzymes [BR:
pwl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
138287480 (RTCB)
Transfer RNA biogenesis [BR:
pwl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138287480 (RTCB)
Prokaryotic type
tRNA splicing ligases
138287480 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
138287480
NCBI-ProteinID:
XP_069084025
UniProt:
A0AAV7SR10
LinkDB
All DBs
Position
4_1:141203902..141259872
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMKVEGVFYVNDALEKLMFEELRNSCRGSAFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSNPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACAQISS
PEGQDYLKGMASAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKETTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctccagtatctggacaagatccacaaaaactgctgg
aggatcaagaagggctttgtgcctaatatgaaggtggaaggagttttctatgtgaacgat
gctttggagaagctgatgtttgaggagctgaggaactcctgcagagggagtgctttcggt
ggatttctacctgccatgaaacagatcggcaatgtggctgccttgcctgggattgtccat
aggtccatagggcttcctgatgttcattctggctatgggtttgccattggaaacatggct
gcgtttgacatgagtaatcctgaagctgtggtatccccagggggtgtcgggtttgacata
aactgtggtgtgcgtctgctccgtacaaaccttgatgagagcgacgtgcaacctgtgaag
gagcaattggcacagtccatgttcgaccacatacccgtgggtgtaggttccaaaggagtc
atccccatgaatgccaaggacctagaagaggctcttgagatgggtgtagattggtcgctg
cgagagggctatgcctgggcagaggacaaagagcactgtgaggagtatggtaggatgctg
caggctgaccccaataaggtctcttccaaggcaaagaaacgaggcctgccacagctgggt
acactaggggctgggaatcattatgcagaaattcaggttgtggacgagatcttcaatgag
tacgctgccaaaaagatgggcattgaccacaagggacaggtgtgcgtgatgatccacagt
ggcagcagagggcttggacatcaggttgctacagatgctcttgttgcgatggaaaaagca
atgaagagggacaaaattattgtgaacgacagacagctggcctgtgcccagatctcctca
cctgagggacaggattacctgaagggcatggcatctgctggcaactacgcttgggtgaac
cgctcttcaatgactttccttacaagacaggcttttgccaaagtcttcaacaccaccccg
gatgacctggatttgcatgtgatctatgatgtgtctcataatatcgcaaaggtggagcag
cacgtggtggatgggaaggagacaacccttcttgtgcatcgtaagggttccacgcgcgcc
ttccccccacatcatcctctcattgctgtggactatcagctaactggacagccggtcttg
atcggtggtactatgggcacgtgcagctatgtactgactgggactgagcaaggcatgact
gagaccttcggaaccacctgccacggggctggtcgtgcattatcccgagctaagtcccgg
cgtaacctagacttccaggatgtgctggacaagcttgcagacatggggattgctatccgt
gtggcttccccgaagctggtgatggaggaggcacccgaatcttacaaaaacgtgaccgat
gtcgtcgacacatgccacgatgctggaatcagcaagaaagccatcaaactccgccccatt
gccgtcattaaaggctag
DBGET
integrated database retrieval system
