Pleurodeles waltl (Iberian ribbed newt): 138287495
Help
Entry
138287495 CDS
T10800
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138287495 (CNOT4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pwl03000
]
138287495 (CNOT4)
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138287495 (CNOT4)
04121 Ubiquitin system [BR:
pwl04121
]
138287495 (CNOT4)
Enzymes [BR:
pwl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138287495 (CNOT4)
Transcription factors [BR:
pwl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
138287495 (CNOT4)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138287495 (CNOT4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138287495 (CNOT4)
Ubiquitin system [BR:
pwl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138287495 (CNOT4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
Rtf2
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
138287495
NCBI-ProteinID:
XP_069084049
LinkDB
All DBs
Position
4_1:complement(155552053..156086388)
Genome browser
AA seq
758 aa
AA seq
DB search
MSRSPDVKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQPSTGTVDKNKNKVTALHRPDSNDRDGWPLLQSSSKSTDCTMMEHRTS
PTLHNGTDQEYMTPDSSDSDFCPVDKSTESLSIGNGESLQQILTSESPSPPPGLTKSNTI
IPISSTNHSARSPFEGATTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAPEPQS
LFTSETIPVSSSTDWQAAFGFGSSKPQEDELGFDPFDITRKALADLIEKELSVQDQPSLS
PTSLQNPSPHTTAKGPGSGYLHPSAPTNSLGGTFSVLPQRFPQFQHRAGYNSFSFPGQAT
RYPWMSFPRNNIMHLNHTANPTSNSNFLDLNLAQQHNTGLGGIPIADHSNSIEGLNMKEW
QDGLRALLPNININFGGQPNAPSPSNTNHSAPTSNTTIINSLNWDNPRSWMDPAIITGIP
SSTGNSLETLQDDNPPHWLKSLQALTEMDGPGGATPSQTHHINPFSAQIPLHRAGWNPYP
PHTNPTSFHSPPPGFQTAFRPPSKAPTDLLQSASLDRH
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcagtcctgatgtaaaagaagatcccgtagagtgtcctctttgcatggagccc
ctggagatagacgatatcaacttcttcccttgcacatgtggttaccaaatctgcagattc
tgctggcatcgtatccgcacagatgaaaatggactttgtcccgcttgcagaaagccatat
ccagaagatccagcagtatacaaaccactctcacaagaagaactgcaaaggataaagaac
gagaaaaagcagaaacagaacgagcgcaaacagaaaatttctgaaaatcgtaaacactta
gctagtgtacgggttgtacaaaagaacctggtctttgttgtgggcctgtcgcaacgcctt
gcagatccagaggttttaaaacgaccggaatattttgggaagtttggcaagatacacaaa
gttgtgattaacaacagtacgtcttatgcaggctcccagggtccaagtgcaagtgcatat
gtaacctacattcgttcagaagatgcactgcgagccatacagtgtgtcaataacgtagtg
gtggatggcagaacgctaaaggcatcactaggtacaacaaagtattgtagttacttctta
aaaaatatgcagtgtccaaagcccgactgcatgtacctccacgaactgggtgacgaggca
gccagcttcacaaaagaagaaatgcaggcgggcaaacatcaagaatatgaacagaagctg
ctacaagaattgtacaagctaaatccaaactttcttcagccatccacaggcacagtggac
aagaacaaaaacaaagtaactgcactacatagaccagacagtaatgacagagatggctgg
ccattattacagagttcaagcaaatccacagactgcacaatgatggaacacaggacgtct
cccacattacacaatggcacagaccaagagtacatgactccagacagctcagactcagac
ttctgtcctgtcgacaaatcaacagagtccctcagtataggaaatggtgaaagtctacaa
cagatattaaccagtgaatcgccatcacccccaccgggcttaaccaaatccaacacaatc
atccccatcagttccaccaaccacagtgcacggtcaccctttgaaggagccacaacggaa
tcacagtcactcttctctgacaatttccggcatcccaatcctatacctagtggacttcct
cccttccctagctctccacagacctccagcgactggcccacagccccagaaccgcagagc
cttttcacatcagaaacgatccccgtctcctcctccacagactggcaagccgcatttggg
ttcggctcatccaaaccacaggaggacgaactggggtttgatcccttcgatatcacccgc
aaagccttagcagacctgattgagaaggaactgtcagtccaagaccagccctccctctcg
cccacatctcttcagaacccctctcctcacactactgccaaaggccctggctccggctac
ctgcatccctctgcacccaccaactccctcggcggcacgttttcggtcttgccacagcgg
ttcccacagtttcagcacagggcgggttacaactcgttcagctttccaggccaggcaacc
cgctatccttggatgtcttttcctcgcaataacatcatgcacttgaaccacacagcaaat
ccaacctcaaatagcaatttcttggacttaaatctcgcgcaacagcacaacacaggcctg
ggagggattcctatagcagaccacagcaattctatagagggtttaaatatgaaggaatgg
caggacgggctcagggcactactaccgaacattaacatcaactttggtggacagcctaat
gcgccctccccctccaacaccaaccacagtgcacctacgtccaacactacaatcatcaac
agcctgaactgggacaacccccgcagctggatggatcccgccatcatcacaggtatccct
tcatccactggaaatagtttagagactctacaggacgacaatcctccacactggttaaaa
tctctccaggccctgacagaaatggatggccctggtggtgccacaccctcgcagacccac
cacataaatcccttcagcgcacagatccccctgcacagagccggctggaacccttacccc
ccacacacaaaccccaccagcttccattccccacctcccggcttccagacagccttcaga
ccccccagcaaagcacccacagatcttctacagagcgcctcactggatcgccattga
DBGET
integrated database retrieval system
