Pleurodeles waltl (Iberian ribbed newt): 138292035
Help
Entry
138292035 CDS
T10800
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138292035 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138292035 (XAB2)
03041 Spliceosome [BR:
pwl03041
]
138292035 (XAB2)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138292035 (XAB2)
Spliceosome [BR:
pwl03041
]
Complex B
Other components
Prp19-related factors
138292035 (XAB2)
Complex C
138292035 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_19
TPR_8
TPR_12
TPR_15
ARM_TT21
TPR_16
ARM_TT21_C
RPN7
TPR_1
NRDE-2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
138292035
NCBI-ProteinID:
XP_069086464
LinkDB
All DBs
Position
4_2:5843851..6044634
Genome browser
AA seq
845 aa
AA seq
DB search
MPGKPELSFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPQNVLNLIYERALKELPGSY
KLWYNYLKQRRKQVKPRCVTDPGFEEVNNCHERALVFMHKMPRIWLDYCHFLMDQYKITR
TRRTFDRALRALPITQHHRIWPLYLKFVRRYPLLETAVRVYRRYLKLSPENAEEYIEYLR
SIDRLDEAAVRLATIVNDENFVSKEGKSNYQLWHDLCNLISQNPDKVKSLNVGAIIRGGL
TRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVQTVMTVRDFTQVFDSFAQFEESMIA
AKMETTSDLGKEEDDDVDLELRLARFEQLINRRPLLLNSVLLRQNPHNVHEWHKRVKLYE
GKPREIINTYTEAVQTVDPAKATGKPHGLWVAFAKFYEDNGQIEDARTIFEKATKVNFKQ
VGDLSSVWCEYGEMELRHENYDQALHILRKATAIPAKKAEYFDASEPVQSRVYKSLKVWS
MLADLEESLGTFKSTKAVYDRIIDLRIATPQIIINYALFLEEHNYFEESFKAYERGISLF
KWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKFAKTIYLLYAKLEEEYGL
ARHAMAVYDRATRAVQPQEQYEMYNIYIKRAAEIYGVTHTRGIYEKAIEVLSDEHSREIC
LRFADMECKLGEIDRARAIYSYCSQICDPRLTASFWQTWKDFEIRHGNEDTIREMLRLKR
SVQATYNTQVNFMASQMLKISGTTPGTDVGPGQNEIDNMRLLEQRAEQLAAEAEQDKPKI
KDKILFVRSDASRSELAELSRQANPDEIDIDDDDESDGSQDDEPDEVHLEQKSVPDAVFG
GLKND
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccggggaagccagagctcagtttcgaagaagaggatttgcagtatgaggaggagatc
ctacgtaatcctttctccgtcaaatgctggattcgctacatcgaattcaaacagaatgcc
cctcaaaatgtgcttaacttgatctacgagcgggccctcaaagagcttcctggaagctac
aagttatggtacaactacctgaaacagcgccggaaacaggtgaagccacggtgtgtgact
gaccctggatttgaggaggtgaacaactgccatgagagggcattggtctttatgcacaag
atgccccgaatttggctggattactgtcactttctcatggatcagtacaagatcactcgc
actcggcgcacctttgatcgcgctttgagagcgttaccgatcacacagcaccaccgtatc
tggcctctgtacctgaagtttgtccgcaggtaccctctgctagagacagctgtccgggtc
tatcgtaggtatttgaagctgagccctgagaacgctgaggagtacatagagtatctccgt
tccattgaccgcctggatgaagctgctgttcgacttgcgactatcgtcaatgatgagaac
tttgtctccaaggaagggaaatcaaattaccagctgtggcacgatctgtgcaatttgatt
tctcagaatcctgacaaagtgaagtccttgaatgtgggggccatcatccgcgggggcttg
acccgctttaccgaccagttgggcaagctctggtgttctttggctgattactacattcga
agtggccattttgagaaggcccgagatgtgtacgaggaggcagtgcaaaccgttatgacg
gtgcgggatttcacccaggtgtttgactcgttcgcccagtttgaagagagcatgattgct
gcaaagatggaaaccacctcggatctgggcaaggaggaagatgatgatgtggacttggaa
ttgcgacttgctcgatttgagcagctgatcaatcgacggcctctgctcctaaacagtgtg
cttctgcgccagaacccacacaatgtgcacgagtggcacaagagagtgaagctgtatgag
ggaaagccaagggagatcatcaacacctacacggaagcggttcagacggtagaccctgca
aaagccactggaaaacctcatggactctgggtggcctttgccaagttttatgaagacaat
ggtcagatagaggatgcccgcactatttttgagaaagctaccaaggtgaacttcaagcag
gtgggtgacctgtcaagtgtctggtgcgagtatggagaaatggagctgcggcacgagaac
tacgaccaggccttgcacatcctccggaaagcaaccgccatccctgctaagaaggcggaa
tacttcgatgcctcagagccagtacaaagccgggtttacaagtcgcttaaggtctggtcc
atgttagctgacctagaggagagtctgggtacctttaagtccaccaaggctgtgtatgac
cggatcatagacctgcgcattgccaccccccagatcatcatcaactatgctctgttcctg
gaggagcacaattactttgaggagagtttcaaggcatatgagcgtgggatctccctgttc
aagtggcccaatgtgtatgacatctggaacacctatctgactaagttcatcgatcgctat
ggtgggaagaagctggagcgagcccgtgacctgtttgagcaagccctggatggttgccct
cagaagtttgctaaaacaatctacctactgtatgccaagctggaagaggagtatgggctg
gcgcggcatgccatggcagtgtatgaccgggccactcgtgcagtgcagcctcaggagcag
tatgagatgtacaacatatacatcaagcgggctgctgagatctatggtgttacccacaca
cgtgggatctatgagaaagccattgaggttctgtcagatgagcattcccgggagatttgt
ctacgctttgctgacatggagtgtaaacttggcgagatcgacagggccagagcaatttac
tcatattgctcacagatatgcgacccacgactaactgcatccttctggcagacgtggaag
gactttgaaatccgtcacgggaatgaagatactatacgtgagatgctgaggctcaaacgc
agtgtgcaagcaacctataacacccaggtcaacttcatggcctcacagatgctgaagatc
tccggcaccactcctgggacagatgttggccctggacaaaatgaaatagataacatgaga
ctgttggaacagagggctgagcagctggctgcggaggcagagcaggacaagcccaaaatc
aaagataaaattctttttgtcaggagtgatgcttcacgcagtgaactggcagagctcagt
aggcaggccaaccctgatgagattgacattgatgatgacgacgagagtgatggcagccaa
gatgatgagccagatgaagtccatttggagcagaagagcgtgccagatgcggtcttcggg
gggctgaagaatgactga
DBGET
integrated database retrieval system
