Pleurodeles waltl (Iberian ribbed newt): 138292125
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Entry
138292125 CDS
T10800
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138292125 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138292125 (PRPF40B)
Spliceosome [BR:
pwl03041
]
Complex A
U1 snRNP components
U1 related factors
138292125 (PRPF40B)
Complex B
138292125 (PRPF40B)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
DTW
Motif
Other DBs
NCBI-GeneID:
138292125
NCBI-ProteinID:
XP_069086621
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Position
4_2:complement(36054195..36232463)
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AA seq
859 aa
AA seq
DB search
MMPPPFIPPPGMPPHFPPIGMPHLGQRPPVMPPVPPGMLPPLIPPMAGPPPLGQMPNMVP
PLMPGMMMPNLPSAPVSAVIPGSESTNAALTTSSTTISIPPMAVVQPTVVSSSSPVVEPP
RKKPTWSEHKSPDGRTYYYNSETKQSTWEKPEELKSKVELSQCPWKEYKSDTGKPYYYNS
QTKESRWTKPKELEAMEGLPMAISTHLAQEPLFHSARCTETREQLYLPTLCTEPLTTDTN
NLIQPEDETGKLHDLPPLAASPHAPSALTAVVIAAPAEEREIQMLSSQPPVQVNIELGDD
AGPQEDGVVQQEEVTSSSDASEKREDEEILESDRKSYSWTTKEEAKQAFKELLKDMGVLS
NASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLKAKEGKEHLQRFL
EQHEKMTSTTRYRKAEQMFGDFEVWAVVPERDRKEIYDDVLFFLAKKEKEEAKQLRKRNI
QALKNILDSMSNVNFQTTWSEAQQYLMDNPSFAEDGDLQNMDKEDALICFEEHIRALEKE
EEEDKEKMRLQEKRQQRKNREAFQHFLDELHETGQLHSMSTWMELYPSVSADIRFSNMLG
QTAFSFLTGSTPLDLFKFYVEDLKARFHDEKKIVKDILKDRNFGVEVNTTFEDFAHIISF
DKRAAALDAGNIKLTFNSLLEKAEAREREREKDEARKLRRREAAFKTMLKQVVPSLEPSS
NWEDVRERFIRDPSFDQITLESERIRLYKEFLHGLENECQHRHVKAKKHSKKSKKQHRKR
SHSQSNSPQSDAEKEKHRKEKENDRECEKELDHSDLRHKSPKRSSKKEKTGWDTSESELS
EGELERRRRTLLQQLDDHP
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgcctccgtttatccctcctccaggaatgcctcctcactttccaccaattgga
atgccacatttaggacagaggcctccagtaatgccgcctgtgccacctggcatgctgcct
ccactgattccacccatggcaggaccacctcctttaggacagatgccgaatatggtgcct
ccactcatgccagggatgatgatgccaaacctgccttcagcacccgtttcagcagttatt
ccagggtcggaatccaccaacgcagccctcactacgtcctcaaccactatctctatccca
ccaatggcagtagtgcagcccactgtagtaagcagcagttctccagtagtggagccgcca
aggaagaaacccacatggagtgaacacaaatccccagatggccggacctactattacaac
tctgagaccaagcaatccacctgggagaaacctgaagagctaaagtcaaaagtagagctc
tcacagtgtccctggaaggagtacaagtctgatacggggaaaccctattactacaactcc
cagactaaggagtctcgatggaccaagcccaaggagctggaggccatggagggtctgcct
atggctatcagcacccatctggctcaggagccactgttccactccgcccgctgtacagag
accagagaacagctatacctcccaaccctctgcactgagcccctcaccaccgacacgaac
aatctgatccagccagaggatgaaacaggaaagctgcatgatttgccaccattggctgca
agtccccatgcgccttctgcactcaccgcagttgtcattgctgcacctgctgaggagcga
gagatccagatgctgtcatcacagccgccagtgcaggtgaacattgagctgggagatgac
gcagggcctcaggaggatggagtagttcagcaggaggaggtaacaagcagcagtgatgcc
agcgagaagagagaagatgaggagatcctggaaagtgaccggaaatcatatagctggacc
accaaagaggaagcaaagcaggcttttaaagagcttctgaaagacatgggtgttctttcc
aatgcatcatgggaacaagcaatgaagatgataattaatgaccctcgatacagtgccctt
cccaaactgagcgagaagaagcaggccttcaatgcgtataaggcccagcgtgagaaggaa
gaaaaagaagaagctcgcctgaaggccaaggaaggcaaagagcatctccagcgcttcctg
gaacaacatgagaagatgacatcaaccacccgctacaggaaagctgagcagatgtttgga
gactttgaagtatgggctgtggtaccggagcgggatcgcaaggaaatttatgatgatgtc
ctctttttcctggccaagaaggagaaggaagaggccaagcagcttcgcaagcgcaacata
caggcattgaagaacatcctggacagcatgagcaacgtcaatttccagaccacatggtcc
gaggcccagcagtacttgatggacaacccaagctttgccgaagatggggacttgcagaat
atggataaggaagacgcactcatctgctttgaggagcacatccgagctctagaaaaagaa
gaggaggaggataaagaaaaaatgaggctgcaagaaaaacgtcagcagcgtaagaacagg
gaagccttccagcacttcctggacgagcttcacgagacaggacagttacactctatgtcg
acctggatggagctgtacccttcagtgagcgccgatatacgtttctcaaacatgctcgga
cagactgcattttcctttctcacaggctccacccctcttgacctgttcaagttctacgtt
gaagatctgaaggctcgcttccatgacgaaaagaagattgtcaaagacattttaaaagac
cgcaactttggtgtagaggtgaacacaacgtttgaggattttgcacatatcatcagcttt
gacaagcgggcggctgcgctggatgccgggaacattaaactcacatttaacagtttgctg
gagaaagctgaagcccgagagcgagaacgtgaaaaggatgaggcccgcaaacttcggagg
cgagaggctgcattcaagaccatgctgaagcaggtggtgccgtccctggaacccagctcc
aactgggaggatgtgcgagaacgctttatcagagatccatccttcgaccaaatcactcta
gagtcggaaagaattcgtctctataaagaatttctacatggactggagaacgaatgtcag
catcgtcatgtcaaggccaagaaacattccaagaaatccaagaagcagcaccgcaagcgg
tcacactcccagtcgaacagcccccagagcgatgcagagaaggagaaacacaggaaagag
aaagagaatgacagagagtgtgagaaggaacttgatcactcagacttgcgacacaagtct
cccaaacggtcttcaaagaaagagaagacaggttgggacacatctgagagtgaactcagt
gaaggggagctagagaggaggcgccggacactgcttcaacagctggatgatcatccataa
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