Pleurodeles waltl (Iberian ribbed newt): 138292449
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Entry
138292449 CDS
T10800
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138292449 (COL2A1)
04518 Integrin signaling
138292449 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138292449 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138292449 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138292449 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
138292449
NCBI-ProteinID:
XP_069087148
LinkDB
All DBs
Position
4_2:complement(184771538..184882277)
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AA seq
1491 aa
AA seq
DB search
MFSFVHSRTLVLLALTQVILLAIVKCQDEDILDAVSCVQDGQRYSDKDVWKPEPCQICVC
DTGTILCDDIICEEAKDCPNAEIPFGECCPICPTEPSSTTSGQAGPKGQKGEPGDIKDAV
GPSGPPGPQGPSGEQGARGDRGEKGEKGALGPRGRDGEPGTPGNPGSPGPPGPPGPPGLG
GNFAAQMTGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAA
GPMGPRGPPGPAGKPGDDGEAGKPGKNGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD
GAKGEAGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGAPGSKGEAGPTGARGPEGPQGSRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGVAGFKGEQGPKGEIGPS
GPQGAPGPAGEEGKRGARGEPGAAGPLGPNGERGAPGNRGFPGQDGLPGPKGAPGERGVA
GLGGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGEPGKGGEKGLPGAPGLRGLPGKDGETGAQGPSGPAGPAGERGEQ
GPPGPNGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSSGPQGLQ
GPRGLPGTPGTDGPKGATGPSGPNGAQGPPGLQGMPGERGTSGIPGPKGDRGDLGEKGPE
GASGKDGARGLTGPIGPPGPSGPNGEKGESGPPGPVGAVGARGAPGDRGESGAPGPAGFA
GPPGADGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPQGPTGVNGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGAPGPPGSAGKDGPKGARGDGGPPGRSGDPGLQGPAGPPGEK
GEPGEDGPNGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDR
GPSGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGALGIKGDRGETGPVGAPGAPGAPGSP
GPVGPTGKQGDRGEAGPQGPLGPSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGTAGDQGATGPSGPAGPRGPPGPVGPSGKDGSNGLPGPIGPPGPRGRGGET
GPAGPPGNTGPPGPPGPPGPGIDMSAFAGLSQPEKGPDPLRYMRADQASSSLRQHDAEVD
ATLKSLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCN
METGETCVYPNPSKIPSKNWWTSKSKDKKHVWFGETINGGFQFSYGDDSSAPNTASIQMT
FLRLLSTDASQNITYHCKNSIAFMDEANGNLKKALHLQGSNDVEIRAEGNSRFTYHALED
GCKKHTGKWGKTVIEYRTQKTSRLPIVDIAPLDIGGADQEFGVDIGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtgcactcacggactctggtgctattagcactcacccaggtcatttta
ttagccattgtcaagtgtcaagatgaagatatcctggacgctgtgagttgcgttcaagat
gggcagcgctatagtgataaggatgtgtggaagcctgagccctgccagatctgtgtgtgt
gacacaggcaccattctctgcgacgacatcatctgcgaggaggccaaagactgccctaat
gccgagatccccttcggagagtgctgtcccatctgccccaccgagccgtcctccaccacc
agtgggcaagcaggacccaagggacaaaaaggtgaacccggtgatattaaggatgccgta
ggaccaagtggacccccaggcccacagggaccatctggtgaacaaggtgcaagaggcgac
agaggtgaaaagggtgaaaaaggtgcacttggaccacgtggaagagatggcgaacctggt
acgcccggcaacccagggtctcctggaccacctggccctcctggcccacccggacttggc
ggaaactttgctgctcagatgacaggaggattcgatgaaaaggctggtggtgctcagatg
ggcgtgatgcaaggaccaatgggcccaatgggaccaagaggacctcctggcccctcagga
tcgccgggtcctcaaggtttccaaggcaaccccggcgaacctggtgaacctggtgctgct
ggcccaatgggtccccgtggtcctcctggccctgccggcaaacctggtgatgatggtgaa
gcaggcaaaccaggaaaaaatggtgaacgtggtcctccaggtcctcagggtgctcgtggc
ttccctggaactccaggtcttccaggagttaaaggacacagaggttaccctggtctggat
ggtgccaaaggagaagctggtgctgcaggtgcaaagggtgaaggtggtgctcccggtgag
aatggtgctcctggtccaatgggtccccgtggtcttcctggagagagaggtcgccctggg
ccctctggtgctgctggagctcgtggcaatgatggccttcctggtcctgctggcccgcct
ggacccgtcggccctgctggcgctcctggtttccccggtgctccaggctctaagggtgaa
gctggcccaactggtgcacgtggacctgagggtccccaaggttcaagaggtgaatccgga
actccggggtctcctggaccttccggggcttctggcaatcctggtactgatggtatccct
ggagcaaaaggttcagctggtgctcctggtattgctggcgctcctggattccctggccca
cgtggtccccctggacctcagggagcaactggccctcttggtcccaaaggtcaaacgggt
gacccgggtgttgcaggtttcaagggtgagcaaggacctaagggtgaaatcgggccctca
ggtcctcagggtgccccaggacctgctggcgaggaaggcaagagaggtgcccgtggtgaa
cctggtgcagctgggccattaggacccaatggcgaaagaggcgctccaggtaaccgtggt
ttcccaggtcaagatggtcttccaggacccaagggtgcccctggtgagcgtggtgtggcc
ggccttggaggccctaagggagcaaatggtgaccctggccgccctggagaacctggactt
cccggtgcaagaggtcttactggtcgacctggtgatgctggaccacaaggaaaagttggc
cccactggggctgctggtgaagacggtcgtccaggccctcccggcccacagggtgctcgt
ggacagcctggtgtcatgggattcccaggtccgaaaggtgccaatggcgagcctggaaaa
ggtggtgagaaaggattgcccggagcacctggtctgaggggtctgcctggtaaagatggt
gaaactggtgcacaaggtccatctggtccagctggccctgctggtgagagaggagaacag
ggtccacctggtccaaatggcttccagggtcttcccggccctccaggtcctccaggtgaa
ggtggtaaaccaggtgaccagggtgtcccgggtgaagctggaacccctggtcttgttggt
ccaagaggtgaacgtggcttcccaggtgaacgtggctcttctggccctcagggtctccaa
ggtcctcgtggtcttcctggaacacctggcactgatggtcccaagggtgcaactggtcca
tctggcccaaacggtgcccagggtccaccgggcctgcaaggaatgcctggcgaaagagga
acttctggtattcctggacccaagggagaccggggtgacttaggtgagaaaggcccagaa
ggtgcttctggcaaagatggtgcaagaggtctgactggaccaattggccctcctggccct
tctggccccaatggggagaagggtgaatctggtcctcctggccctgttggagctgttggt
gcccgtggcgctcctggtgatcgcggtgagtccggtgcacctggacctgctggctttgct
ggtccacctggtgctgatggtcaacctggaatcaaaggagaacaaggcgagtctggtcag
aagggagatgctggttcgccaggcccccagggtccatcaggcgctcctggcccacagggt
ccaactggcgtgaatggtcccaaaggagctcgtggtgcacagggaccacctggtgctact
ggtttccctggtgctgctggcagagttggcccacctggccctaatggtaacccaggtgcc
cctggaccacctggttctgctggtaaagatggtcccaagggtgctcgtggcgatggtggt
cctcctggccgttctggtgaccctggtctccaaggccctgctggccctcctggtgagaag
ggtgagcctggtgaagatggtcctaatggccctgatggtcctccaggtcctcagggattg
gctggtcagcgtggtattgttggtctgcctggacagcgtggtgagagaggattccctggt
ctccccgggccttctggagaacctggcaaacaaggggcccctggatctgctggtgaccgt
ggcccctctggtcctgttggccctcctggtctgactggccctgctggagaacctgggcgt
gaaggcaaccctggctcagatggtccccctggtagagatggggctcttggcattaagggt
gaccgtggtgaaactgggccagttggcgctccaggagctcctggtgctcctggatctccg
ggacctgttggtccaactggcaagcagggagatagaggtgaagctggtcctcaaggtccg
ttgggtccatctggtcctgctggcgctcgtggtatgcctggtccacaaggccctcgcggt
gacaagggtgaagctggtgaggctggtgagagaggacaaaaaggtcacagaggttttaca
ggtcttcagggtctgcctggtcctcctggcacagctggtgatcaaggtgcaactggtccg
tctggccctgctggtcccagaggtcctcctggcccggttggtccttctggtaaagacggc
tctaatggtttgcctggtccaattggtcctcctggtcccaggggtcgtggtggtgaaact
ggccctgctggccctcccggtaacactggcccacctggtccacctggtcctccaggtcct
ggcattgacatgtctgcctttgctggtttgtctcaacctgagaaaggacctgatcctctc
cgttacatgcgagctgaccaggcctcaagctcacttcgccagcatgatgctgaggttgat
gctacactgaaatctctgaacaaccaaattgaaagcattcgtagccctgaaggcagcagg
aaaaatccagcccgtacttgccgtgacctgaagctgtgccatcctgagtggaagagtggt
gactattggattgatcccaaccagggttgcactttggatgccattaaggttttctgtaac
atggaaactggggagacttgtgtctatcccaatccatcaaagatccccagcaaaaactgg
tggacaagcaaaagcaaggacaagaagcacgtttggtttggtgaaacaatcaatggtggc
tttcaattcagctatggtgatgacagctctgcacccaacacagccagtattcagatgacc
ttcttgcgtctgctgtcaacggatgcatcccagaacatcacttaccactgcaagaatagc
attgctttcatggatgaggctaatggcaacttaaagaaagctcttcacctgcaaggatct
aacgatgtggagattagagcagagggcaacagccgatttacataccatgcattagaagat
ggttgtaagaaacacactggcaaatggggtaagacagtcatcgagtacagaacgcagaag
acatctcgcctgcctattgtggacattgcgcctctggatattggtggagctgatcaggaa
tttggtgttgacattggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
