Pleurodeles waltl (Iberian ribbed newt): 138293132
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Entry
138293132 CDS
T10800
Symbol
TRMT13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pwl03016
]
138293132 (TRMT13)
Enzymes [BR:
pwl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
138293132 (TRMT13)
Transfer RNA biogenesis [BR:
pwl03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
138293132 (TRMT13)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
138293132
NCBI-ProteinID:
XP_069088266
LinkDB
All DBs
Position
4_2:608479177..608587946
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AA seq
467 aa
AA seq
DB search
MAAPSEDGVHAPMPGRCGFYVAKKSRFCKMIVSAGKQLCGEHATHEMEDETTKKRIPCPL
DPKHTVNEDQLQKHLRKCNSREKPKPVYYVQDVNSGSEDGTATFREQIPISSLSDVQLEN
LINKLEKACNGLVPILEDRMLLHKALQEALNDPKNGESASKHLKQQASILGNMDRLGLLE
SGRCYVEFGAGRGKLSHWVDTALGGTENTHFLLVERATTRFKVDGKHRKQNSLFERLHID
IQHLCLSKVPLLIQKNLQVVGIGKHLCGAATDLALRCLLERCATVDEEPSKRLKRDVIEP
AANSSTSGDASGHDGSVPIAGIVIALCCHHRCDWKHYVGKSFFQALGLSEEDFSFFQRLS
SWATCGIRKKPDDSSTSHAVSSELENNADHHDLEDQLQNFSSDSLQRLLTVEERENIGRL
CKLLIDRGRIHYLQQKGYRADLQYYTDTAVSLENVLLTAVPSHSALL
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaccttctgaagacggcgtgcacgccccaatgccagggagatgtggtttctac
gtggcaaaaaagagcagattctgcaaaatgattgtgtcagcaggaaagcaattatgcggg
gagcacgcaacgcacgaaatggaggatgaaaccactaagaaaagaatcccatgtcctctt
gatccaaaacacactgtaaatgaagatcagctacagaagcatctgagaaaatgcaattcc
agagagaaaccaaagccggtttactatgtccaagatgtaaattcaggttcagaagatggt
acggctacattcagagagcaaatcccaatttcatctttgtctgacgtacaattagagaac
ttaataaacaagctggaaaaggcatgcaatggattggttcctatacttgaggatagaatg
ctgttacacaaggcactacaagaggctttgaatgacccgaagaatggagagtccgcttca
aagcacttgaagcaacaggcttcaattttaggtaatatggacaggctaggtttgctcgaa
tctgggaggtgctatgtggaatttggtgctggacggggaaagctatcccactgggtcgat
acagcattgggaggcacggaaaatactcacttcctccttgtggaaagagccaccacccga
ttcaaggttgatggaaagcacagaaaacaaaactctttatttgaaaggcttcacattgat
attcaacacttatgtttaagtaaggtcccattacttattcagaaaaaccttcaggtggtg
ggaattggtaaacatttatgcggtgctgcaacagatcttgccttgagatgtttactagaa
agatgtgcaactgtggatgaggaaccttctaagcgtttaaaaagagacgtcattgagccc
gctgccaacagttctactagtggcgatgcatctgggcatgatggatcagtacccatcgct
ggaattgttatcgcactgtgttgtcatcataggtgtgactggaagcattatgtgggtaaa
tcgtttttccaggcacttggcttgagtgaagaagattttagcttttttcagagactctcg
agctgggccacgtgtggaatacgaaagaaaccagatgacagttccactagtcatgctgtg
agctcagagctcgagaataatgcagaccaccacgacttagaagaccagctgcagaatttc
agttctgatagcctgcaaaggctgcttactgtcgaagaacgagaaaacataggacgtctt
tgcaagcttttgattgaccgtgggcgcatccattatttacagcagaaggggtatcgggcc
gacctgcaatactatacagacactgcagtgtccttggagaacgtactgttgacagctgtg
ccaagtcactctgcattgttgtag
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