Pleurodeles waltl (Iberian ribbed newt): 138293729
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Entry
138293729 CDS
T10800
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138293729 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138293729 (CLP1)
Enzymes [BR:
pwl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
138293729 (CLP1)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
138293729 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
MMR_HSR1
ATP_bind_1
AAA_22
TniB
AAA_16
nSTAND3
CbiA
GTP_EFTU
AAA_18
Motif
Other DBs
NCBI-GeneID:
138293729
NCBI-ProteinID:
XP_069089164
LinkDB
All DBs
Position
4_2:1054032975..1054077670
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AA seq
426 aa
AA seq
DB search
MAEEPSEEKGPPALKFELEKETELRFEVDSAQSVQLELLSGMAEIFGTELTRNKRFTFDA
GCKVAVFTWHGCSVMLSGEPEVAYVSKDTPMLLYLNIHTALEQMRRQAEKEDERGPRVMV
VGPTDVGKSTLCRLLLNYAVRVGRRPTYVELDVGQGNVSIPGTMGALYIERPADVEEGFS
VQAPLVYHFGSTTPGTNIKLYNKLTSRLAEVFNQRCEVNRRASISGCVMNTCGWVKGSGY
HALVHAASAFEVDVVVVLDQERIYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDE
RIREYFYGYRGSFYPHAYDVRFSDVKIYKVGAPAIPDSCLPLGMSQEDNQLKLVPVTPGR
DMVHHLLSVSTADSTDENIVETSVAGFIVVTSVDPERQVFTVLSPAPRPLPKGILLIMDI
RFMDLK
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagccaagtgaggagaaaggaccaccagctctgaagttcgagctggagaaa
gaaacagaactgcgttttgaagtagattcagctcagtctgtgcagctggaattgctctct
ggcatggcagagatctttggaaccgaactcacccgcaacaaacgatttaccttcgacgct
ggctgcaaagtggcagtttttacctggcacggctgttctgtcatgctgtctggtgaacca
gaagtggcttatgtctccaaggacacacccatgctcctctacctcaatatacacacagcc
ctggagcagatgcgaaggcaggctgagaaggaggacgagcgtgggccacgggtgatggtg
gtgggccccactgatgtgggcaagtccactctctgtcggctacttctcaactatgcagta
cgtgtggggcgcagaccaacatatgtggagcttgacgtggggcagggcaatgtatctatc
cctggcaccatgggggcattgtacattgagcgccctgctgatgtagaagaaggcttctct
gtgcaggctccattagtctaccactttggctcaaccactcctggtaccaacatcaagctc
tacaacaagctcacttcacggttggcagaagtcttcaatcaacgctgtgaggtgaaccgt
cgggcctccattagcggctgtgtcatgaacacctgtgggtgggtgaagggctctgggtac
catgccctggtacatgctgcttctgcctttgaggtggatgtagttgtggtactggatcag
gaacgcatctacaatgagctcaagagggacctgccccactttgtgcgcactgtgctcctc
cctaaatcaggtggcgtggtggaacgctccaaagacttccgtcgagagtgcagggatgag
cgcatccgcgaatacttctatggttatcgtggcagcttctacccccatgcgtatgatgta
cgtttttcagatgtcaagatatataaggtgggagctcctgccattccagactcgtgcttg
ccgctgggcatgtcccaggaggataatcaactaaaactggttccagtcacaccaggtcgc
gacatggtgcaccatttactgagtgtcagcactgctgacagcacagatgagaacatagtt
gagacaagtgtggctggtttcattgtggtgactagcgtggaccctgagcggcaagtcttc
actgtgttgtcgccggccccgcgtcctctaccaaagggtatccttctcatcatggacatc
cgctttatggatttgaaatag
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