Pleurodeles waltl (Iberian ribbed newt): 138295631
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Entry
138295631 CDS
T10800
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138295631 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwl03400
]
138295631 (MSH2)
DNA repair and recombination proteins [BR:
pwl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138295631 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
138295631
NCBI-ProteinID:
XP_069090138
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Position
5:290952530..291482688
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AA seq
932 aa
AA seq
DB search
MAVQPKQTLSLDSGAESGFLAFYRSMPNKPSTTLRVFDRSDYYTVHGSDALFAAKEVFKT
NGVIKYLGTGDKKLESVVLSKMNFESVVKDLLLVRQYRVEVYKNKASSKSSKDNDWHLEY
KASPGNLSQFEEILFGNSNMSSAAGVVGVKLSVADGQRVVGVGYIDSTLRKLGVCEFSDN
DQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIVQRGGILITDRKKGEFTTKDNVQDL
NRLLKPKKGEQVTSSALPEMEKQVAMASLSAVIKYLELLSDDSNFGQFSLTTFDLNQYMR
LDNAAVGALNLFQGSAEDTSGTQSLSGLLNKCKTPQGQRLMNQWIKQPLMDKNKIEERLN
LVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRKTANLQDCYRIYQAVECLPSVVMAL
EKYQGVHQMLLLAVFATPFNDLINDFQKYQEMIETTLDMDQIENHEFLVKPSFDPNLTEL
REQMDELEKNMKVTLNSAARELGLDAGKTIKLESNSQLGHYFRITCKEEKALRNNKKFTT
IDIQKNGVRFTNSKLSSFNEDYIRNRDEYEEAQNAIVKEIINISAGYVDPMQTMNDVIAQ
LDAIVSFAHVSNGAPVPYVRPVILERGQGRITLTASRHPCIEVQDEVAFIPNDAIFEKDK
QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEVSIVDCILARVGAGDSQLKG
VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFA
THFHELTSLADQVPTVNNLHVTALTTEETLTMLYRVKKGACDQSFGIHVAELVHFPKHVI
ENAKQKALELEEFQNVGKTEEFEEEPAAKKRYQEREEGEKMIQSFLSKIKALPIGEMSED
DIKKKLKQMKAEVMATNNSFVNEVISRIKSST
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcaacccaagcaaaccttgtccctagatagcggggcggagagcggcttcttg
gctttttatcgttctatgcccaataagcccagcaccaccctacgggtcttcgatcgcagc
gactactatacagtgcacggcagcgatgccctgtttgcggcaaaagaggtgttcaagacc
aatggagtcatcaagtatttggggacaggagacaagaaactggagagtgtcgtgctcagt
aaaatgaactttgagtctgttgttaaagatctgcttctagttcgtcagtaccgggttgag
gtttacaaaaacaaagcgagcagtaaatcgagcaaggataatgattggcacttggagtat
aaggcttctcctggaaacttgtcccagtttgaggagattctctttggcaacagtaatatg
tcgtcagcagctggagtagtgggtgtgaagctgtctgttgctgatggccagagagtcgtt
ggtgttggttatattgattctactttgaggaagctgggagtgtgcgagttctctgataat
gatcagttctcgaacctggaagcattgctgattcagattggcccgaaggagtgcgtactg
cctggcggggagactgctggagacatgggcaagttgagacagattgttcagaggggtggc
attttgatcacagacagaaagaaaggagagttcacaacaaaagataatgtccaagatcta
aatcgtttattgaagcccaaaaagggagaacaagtaaccagttctgcattgccagaaatg
gaaaagcaggttgcaatggcatcgttatctgctgtcatcaagtatttggagctgttatct
gatgattcaaattttggacagtttagcctaaccacttttgatctgaatcagtacatgaga
ctggataatgcagctgtgggtgcgcttaaccttttccagggttctgctgaagatacaagt
ggcacgcagtctttgtctggattattgaataagtgcaaaactcctcaagggcagaggctg
atgaaccagtggattaaacagccgcttatggacaagaataagatcgaagaaagactaaat
ctggtggaggcatttgttgaagatgctgagctaagacaatctcttcaagaagatcttctg
cgtcgctttccagacctcaatcgtcttgcaaagaagtttcagagaaaaacagcaaatctt
caagattgttacagaatataccaagcagttgagtgtttacccagtgttgtgatggcgctg
gagaaatatcaaggagttcaccagatgctactgctggcagtatttgcaactccatttaac
gacctaattaatgatttccaaaaatatcaggaaatgatagaaactaccttagacatggat
cagattgaaaatcatgaattccttgtgaagccctcctttgatcctaacctgacagaactg
agagagcagatggatgaactggaaaagaatatgaaagtaactctgaatagtgcagccaga
gagctcggtttggatgctggcaagacaataaaactggagtcgaactctcaattaggacat
tacttcagaattacctgcaaggaagagaaagccttgaggaacaacaagaaatttactact
atcgacatccagaagaacggagtacgatttactaacagtaaattaagctccttcaatgaa
gattacatacgaaatcgagatgaatatgaggaagcacagaacgccattgtcaaagagatc
atcaacatctctgcaggttatgtggacccaatgcagacgatgaatgatgtgatagctcaa
ctcgatgccattgtgagctttgctcacgtgtcaaatggcgcaccagtaccctacgtgcga
cccgtcattctggagagagggcaggggagaatcacgctgaccgcttctaggcacccttgc
attgaagtgcaagatgaagtagcatttatccctaatgatgccatctttgagaaagacaag
caaatgtttcatattatcactggtcctaacatgggaggtaaatcaacttacatccgccag
actggagtgatagttcttatggcccaaattggttgctttgttccttgtgactcagcagag
gtgagcatcgtagactgcattctggctcgtgttggtgctggtgatagccaactgaaggga
gtgtcaacttttatggcggaaatgttagaaactgcgtctatactcaggtcggcgaccaag
gactctctgataattattgatgagctgggaagggggacctcaacctacgacggttttggc
ttggcctgggctatctccgaatacattgccacaaaaataggtgctttctgcatgttcgcc
acacattttcacgagctgacctccttggccgaccaagtgccaacagtcaacaacctgcat
gttactgcattaactacagaggagaccctcaccatgctctaccgtgtcaagaaaggtgcc
tgtgatcagagctttggaatacatgtagcggagctggtacattttccaaagcatgttatt
gaaaatgcgaaacagaaagctttagaactggaggagtttcaaaatgttggaaagactgaa
gagtttgaggaggagccagccgccaagaaacgctaccaggaaagagaggaaggtgaaaaa
atgatccagtctttcctttccaagattaaagctctaccaataggcgagatgtcggaagac
gatattaaaaagaaactaaagcaaatgaaggcagaagtgatggctacaaataactctttt
gtgaatgaagtgatatcccgaataaagagttcaacataa
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