Pleurodeles waltl (Iberian ribbed newt): 138295808
Help
Entry
138295808 CDS
T10800
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03008
Ribosome biogenesis in eukaryotes
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138295808 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
138295808 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwl03021
]
138295808 (XRN2)
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138295808 (XRN2)
03009 Ribosome biogenesis [BR:
pwl03009
]
138295808 (XRN2)
03016 Transfer RNA biogenesis [BR:
pwl03016
]
138295808 (XRN2)
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138295808 (XRN2)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
138295808 (XRN2)
Ribosome biogenesis [BR:
pwl03009
]
Eukaryotic type
Pre-60S particles
RNases
138295808 (XRN2)
Transfer RNA biogenesis [BR:
pwl03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138295808 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF5669
Motif
Other DBs
NCBI-GeneID:
138295808
NCBI-ProteinID:
XP_069090452
LinkDB
All DBs
Position
5:524590021..525295558
Genome browser
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYATIITHAVEEKPKECNGIQIPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPENKPAPKNEDEMMVAIFEYIDRLFNICRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKQRVREEVLKRGGYLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCPLCSQVGHEIKDCQGLPREKKGEHDEFADSLPGSDVE
FIFIRLNVLREYLEKELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVTIYKNVVHKTGGYLTESGFVNLERVQMIMQAVGEVEDNIFKKRKQDDENFRRRNKE
KRKRMKREQERPSFMPSGQFAPQALGMRNNHGTQAINNPRQTAFQMRMQNTTPSGSPNTS
FNSDGSPSPSGVKRKPEDSDSDPEPEDNIRLWEEGWKQRYYKNKFDVDATDEKFRRKVVQ
SYVEGLCWVLRYYYQGCSIWRWVFPIHYAPMGCEFESIPTLSSEHFPKESTPFKPLEQLM
GVFPAASGNFLPTTWRRLMSDPDSSIIDFYPDDFALDLNGKKYAWQGVALLPFVDERRLR
AALAEVYPDLTSEEKRRNSLGSDHIFVGKNHQLWDFLRELYRTNTSEPTDIPPELCHGIG
GKLTVHDGAVLPDETVFSPVPMLRDLTQNSAVSILFKDPQFEEGYVFKAVVLPGAKKAAP
TLKPGDWEKSNNGRNWKPQLGFNPNRKPVHLDSSAFRTLGHVIPKDNRGQGSGQYSNAPP
PGAYNPGNAYRQGSRGHPQIPTLSNTWQSRAPSYNPPPQQRNFGSDPLLSWNRSLHSQSS
SYRQDRHPDQGRQGGYPPRRDDRGDRGRQPYNSGRNYPLPPPPGRYNWK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcctttttccgttggctcagccgcaaatacgcaacaataattacgcac
gctgtggaggagaagcctaaagaatgcaatggcatacagatcccaatagataccagcaag
ccaaatccaaatgaagtggagtttgacaacttgtatctggacatgaatggcatcatccat
ccttgcacacatcctgaaaacaagccagctcctaaaaatgaagatgaaatgatggttgca
atttttgagtatattgatagacttttcaacatttgcagaccaaggaggcttctttacatg
gcaattgatggagtggcccctcgtgccaaaatgaatcagcagcgctctagaagattcaga
gcatcaaaggaaggtgtagagttaacagaggagaaacaacgtgtccgggaggaagtgctg
aagcgaggaggttatcttccgccggaagaagtaaaagaaagatttgacagcaactgtatt
actccaggcacagagtttatggacaaccttgcgaaatgccttcgttattacgttgctgat
cgtttgaacaatgatcccgggtggaaaaatttaacggttattttgtctgatgccagtgct
cctggtgaaggagagcacaaaattatggattacattagacgccaacgaggtcagccaaac
catgatccaaacactcaccattgtttatgcggagctgatgctgatctcatcatgcttggg
ttggccactcatgaaccaaattttacgatcattcgagaagaattcaaaccaaaccagcca
aggccttgtcctctgtgttcccaggttggtcatgaaatcaaagactgccagggtttaccc
agagagaaaaaaggagagcatgatgaatttgctgacagcctccctgggtcagatgtggag
ttcatttttattcgcctgaatgtcttgcgagagtatttggagaaagaactcacaatggca
agtttaccattcccatttgactttgagaggagtgttgatgattgggtcttcatgtgtttc
tttgtgggcaatgacttcttgccacatttgccttccttggagattcgagagggtgccatt
gatcgacttgttaccatctataaaaatgttgttcataaaactgggggctacctcacagaa
agtgggtttgtcaatttagaacgtgtacagatgatcatgcaagcagttggagaagtagag
gacaacatatttaaaaagagaaaacaagatgatgagaacttcagaagaagaaacaaagaa
aagagaaaaagaatgaagagggaacaagaaaggccttctttcatgccatctggccagttt
gctcctcaggctctaggtatgaggaataatcatggtactcaagcaataaataatccaaga
cagaccgcttttcagatgcggatgcagaatacgaccccttcaggatcccctaatacaagt
ttcaactctgatggctccccatccccatcgggggttaaaagaaaacctgaagacagtgac
agcgaccctgagccagaggataacatcaggttgtgggaagaaggttggaaacaacgttat
tataagaacaaatttgatgttgatgctactgatgagaaattccgtcgcaaagttgtacag
tcttatgttgaagggctctgctgggttcttcgatattattaccagggctgcagcatctgg
agatgggtcttccccattcattatgccccaatgggatgtgaatttgagtctatccctaca
ctttccagtgaacatttcccaaaggagagcaccccattcaaacctctggaacaacttatg
ggagtatttccagcagccagtggtaactttctaccaacaacatggcggcgattgatgagt
gatccggactccagtataattgacttctaccccgacgattttgctcttgatctaaatgga
aagaaatatgcttggcaaggtgtagctcttttgccatttgttgatgaacgtcgcctgaga
gccgcccttgcagaagtttacccagacctcacttctgaggaaaagcgacgaaatagcctg
ggaagtgatcatatatttgttgggaaaaatcaccagctttgggactttctccgtgaactg
tacagaactaacacttcagagccaacagacattcctccggaactttgtcatgggattggg
ggaaaacttacagtgcatgatggagcagttcttccagatgagacagtattttcgcctgtt
cccatgttgagggatctaacacagaactccgcagtcagcatcctatttaaagatccacag
tttgaggaaggatatgttttcaaagcggtggttttaccgggggcaaagaaagctgcccca
acactgaaaccaggagactgggaaaaatcaaataatggaagaaattggaagccccagctt
ggtttcaacccaaacagaaaaccagttcatctagattcgtcagcattcaggaccttggga
catgtaataccgaaggacaacagagggcaagggagtggacagtacagtaatgcccctcct
cctggagcttacaatccaggaaatgcatacagacaaggctcaaggggacatccacaaata
cccacattgtctaatacctggcaaagtagagcaccaagttacaatcctccaccccagcaa
agaaattttgggagtgatcctttgttgtcatggaaccgcagcctgcattcccagagttct
tcataccgccaagatcgacatccggaccagggcagacaaggtggttatccaccaagaaga
gatgatcgtggggacagagggagacagccatataattctggaaggaattaccccttacca
cctccaccaggaagatacaactggaaataa
DBGET
integrated database retrieval system
