Pleurodeles waltl (Iberian ribbed newt): 138295967
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Entry
138295967 CDS
T10800
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138295967 (SCAF8)
Spliceosome [BR:
pwl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
138295967 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138295967
NCBI-ProteinID:
XP_069090735
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All DBs
Position
5:698317527..699825181
Genome browser
AA seq
1829 aa
AA seq
DB search
MDAVKVFNNELFSLNDYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQDKDLFAPRFCINIINTFQNLYRCAADDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMASGIVPPIAPVFPSSASNVGSSSGRRSAQVVKHWVRSQEFQGTSPG
SPLTPHIIMGTPVTPVPQANISANMSDPWASQMPNSDTLTAVAQILQSPQGQQLQQLVQT
LQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAASNSINPLEQTVSLSKRLMDTFDFV
DDADHGDESKMEAPTSQHSLVAETLNSSLFQQLAEHLQQQNLEHLRQQIMEQQPSQTIAQ
ENQESQESQEVTFGSENSGSPSQGSSQQQFQEAESKLEESQEMEQEDMELEEVTEQEVTE
EEIFEEEEEEEKKPVPQSKSSTPSRSHSRSPRKRRSRSRSGSRKRKHRKRSRSRSREWDR
DRKRKTSRSYSSERRTYEREKDRLKKGLPPIRSKTLSVCSTTLWVGQVDRKVTQQDLTNV
FEEFGQIESINMIPPRGCAYISMVHRQDAYRALQKLRAGTYKLVSKVVKIAWALNKGVKM
SYKQFWDAELGVTYIPWEKVKLDDLKSFAEGGMIDQETVNPEWEAVKIPEPVKVATPLPA
TTTVTITTTTAQSASDLKNSTTAEVVPSFTEAAVVCTQGVEADTQPDANYSQPTSAYTQS
VAAYTQPVTAFSQPVSAYTQPSAVYTQPSAVYTQPSAVYTQPSAVYTQPSAVYTQPSAVY
TQPAAVYTQPAAVYTQPAAVYTQPAAVYTQPTAVYTQPTAVYTQPTAVYTQPTAVYTQPT
AVYTQPTAAYSQPVTLLQMPLAPAVPAVNLIPPVFPLSMSVPPPGYVMPPPPFLRPAFDP
SQPPPGYMAPPIPPPAVIPPPAIPPPTVTAPLIQPPLSVTQETIKSSSFSSIGLPAASLS
ASNDTETVSFENSFNPLPTSQAEPGEKQSEATDIQVTSTESAPGSALQNNVSSSSGIQSG
PPPVTTNSMPILNMPGRIHGNTFVEGHPGLLSHPLGPRFPFMQPGMLPQRNIPPPTIIDP
SVPPPQGPFPPTDLLNRTETSFVTPVQNVDNNSNSEKVIPHGNEGNQQEGDRDYRFPPVE
NREISRSAHVDTSSNAGRLHVDPQEGIQRQIEESGILGRPFMNIQDGQRLVLNAHEGLLR
PRTDETLLIQRIDARGTLPRLGPDAHENLIRLGMDVREGLLRSDTGDGLQRQVVDARQGL
QRHGPNLRENMLGLPLDSQERLQRPGTESQENFQRADADSREFLQRMKAGSRGALHKQGA
DSRDGLPRPGLGPREGLLGSGPDAGLLRIGPFPREGLLGPGPDMQEGLLRLRTFPREGLL
GDRPVARDGQGRPEPEPESHGRQESDAKELHNWPGSDTRDGPEWSRSDLREGWLGPEPKE
GLHWPGPEGHDAQRRPPPDIHEILLRLGTHTRESPLRPPLDMRQHFGRPLLDARQIFLRP
PVDEREHFGRPPMDARETFGRPPMEGREHFGRPPMEGRPLIEGRELFGRPPMEGREMFVR
PHMEGREPFVRPHMEGREPFVRPPMEGREVFGRMPLEGREHFERLPLEMRENHGRQFIEA
LGRREPFGFNADKPWGHRDFDERQHLPLPVFGSPQGFHDERERFHLGNIRPDFRGGPMWN
RGVDQEALRDHGERKIQREKQRDRDDRDVDFRKETNSNRFRKEREQGTWVPPKSQISEYV
EGTTATSPTTTSPMPTSFPEKVENVPQINGESAAIDTSQPSVESKKEPELSDKLVSSNEK
SKEKSKEKVDTDADQKCQPVVESTETKGT
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaaagtattcaacaacgagttattctcactgaatgattacaagccaccc
atttccaaggctaagatgacacagattacaaaatcagccatcaaagcaattaagttctat
aaacatgtggtgcagagtgttgaaaaatttattcaaaagtgtaagccagagtacaaggtg
ccgggtctctatgttatagactccattgttcgtcagtctcggcatcagtttggacaggac
aaggatctttttgctccccggttctgtattaacatcatcaataccttccagaacttatat
cgctgtgctgccgatgacaagagtaaaatcgtcagagtactaaatttgtggcagaagaat
aatgttttcaaaagtgatataattcagcctctactggatatggcttcaggaatagttcct
ccaattgcccctgtttttccaagttcagcatcaaatgtcggcagctcatcgggaaggcgg
tctgctcaggtggttaagcattgggttcggagtcaggagttccagggaacaagtcctggc
tctcccctgactccacacattatcatgggaacaccagtaacccctgtcccacaagcgaac
atctctgcaaatatgtccgacccatgggcttcacagatgcccaattcagatacgctgact
gcagtagcacaaatcttgcaaagtccgcagggccaacagcttcaacagttggtacagaca
ctacagattcagcagcagaaaccacagccttctttgcttcaagctttggatgctggcctc
gtcgtccagttgcaggcattgaccgcacagctcactgcagcagctgcatcaaactcaatc
aatccattggagcagactgtctctctaagcaagagattgatggacacttttgattttgtc
gatgatgctgaccatggtgacgaatcaaaaatggaagcaccaacttcacagcactctctt
gttgccgagaccctaaacagctcgctatttcaacagctcgcagaacatcttcagcagcag
aatctagagcacttaaggcagcaaattatggaacagcagccttctcagacgattgcacag
gaaaatcaagaaagtcaggaaagccaggaagtcacttttggttctgagaattctgggtcg
ccatcgcagggaagcagccaacaacagttccaggaggcagaatctaaacttgaagagtca
caagaaatggagcaagaggatatggagcttgaagaggtgacagagcaagaagtgactgaa
gaagagatatttgaagaggaggaggaagaagaaaaaaaacctgttccacagtcaaaatca
agcacaccttcccgatcccattcaaggtctccaaggaaaaggaggtctagatcacgatct
gggtctcggaagcgtaaacacagaaaacggtcccgctcgaggtcaagagagtgggataga
gaccggaagaggaagacctctcgctcttactccagtgagaggagaacgtacgagcgagag
aaagacagactcaaaaagggacttcctccaatacgttctaaaacgctcagtgtttgtagt
acaacactctgggttggccaagtggacaggaaggtcacacagcaagatttgacaaatgtc
tttgaagaatttggccaaattgagtcaattaacatgattcctcccagaggttgtgcttac
atttccatggttcacagacaagatgcatatcgtgctcttcagaaacttcgtgctggtact
tataaacttgtatcaaaagttgttaagattgcttgggctttgaacaaaggtgtgaaaatg
tcatacaagcaattctgggatgctgaactgggtgttacctacattccctgggagaaggtg
aaactggatgacttaaaaagctttgctgaagggggaatgattgatcaagagactgtaaat
cctgagtgggaagctgtgaagattccggagcctgttaaagtggccactccgctgcctgcc
acaactacagttaccatcaccactaccacggctcagagtgcctctgatctcaagaattca
accacagctgaagtagtgccttctttcactgaagcagcagttgtctgcactcaaggggtg
gaagcggacacgcaaccagatgctaactattctcaaccgacatcagcctacactcagtcg
gtggctgcctacacacaacctgtgacagcgttcagtcagccagtatcagcctacacccaa
ccttctgctgtgtacacccaaccttctgctgtgtacacccaaccttctgctgtgtacacc
caaccttctgctgtgtacacccaaccttctgctgtgtacacccaaccttctgctgtgtac
acccaacctgctgctgtgtacacccaacctgctgctgtgtacacccaacctgctgctgtg
tacacccaacctgctgctgtgtacacccaaccgactgctgtgtacacccaaccgactgct
gtgtacacccaaccgactgctgtgtacacccaaccaactgctgtgtacacccaaccaact
gctgtgtacactcaaccgacagctgcttacagtcagccagtaaccttactgcagatgccg
ttggcaccagctgtacctgctgttaatttgatcccgccggtgttccctctatcgatgtca
gtcccacctccaggttatgtgatgcccccgcccccatttctacggcctgcatttgatccc
tcacaaccaccacctggatacatggctcctccaatcccaccacctgctgtcattccaccc
ccagctattccaccgcctactgttacagcccctttgattcagccccctttgtctgtgacc
caagagacaataaaaagttcatctttcagtagcattggattaccagctgcttcactctct
gcctctaatgatacggaaactgtttcatttgaaaactcattcaacccactaccaactagt
caagcagagcctggagaaaagcaatctgaagcaacagatattcaggttacttcaacagaa
agtgctcctggatctgctctccaaaacaatgtttcaagcagttctggaattcagagtggc
ccaccaccagtaacaaccaacagcatgcctattttaaatatgcctggacgtattcatgga
aatacttttgtggaaggccatccaggattgctgtcacacccacttgggccaagatttccc
tttatgcagcctggtatgctccctcaacgaaacatacccccgcccaccatcattgaccct
tcagtccctccacctcaaggtcccttccctccaacagacttattaaatcgtactgagact
tcatttgtgactcctgtacaaaacgttgataacaattctaattctgagaaagtgatacca
catggaaacgagggaaaccaacaggagggagatagagattatcgctttcctccagtggaa
aatcgagagattagtaggtcagcgcatgtggataccagtagtaatgctggaagacttcat
gtagatccacaagaaggtatacagcgacaaattgaagagtctggtattctaggaagacca
tttatgaacatacaagatggtcagaggctggttcttaatgcacatgaaggcttactgcgg
ccaagaacagatgaaaccctactgattcaaagaattgatgcgcgggggaccctgccaaga
ctaggtccagatgcccatgaaaaccttatcagacttggaatggatgtccgagaaggcctt
ttaagatcagacactggagatggcttgcaaaggcaagtagtcgatgcacgacaaggctta
caaaggcatgggccaaatctgagggagaacatgcttgggcttccactagattcacaagaa
aggcttcaaagaccaggaacagagtcacaagagaactttcaaagagcagatgccgattca
cgagaattccttcaaagaatgaaggcaggatcacgtggagcccttcataaacaaggggcc
gattcacgtgatggcttgccaagaccaggcctgggtccacgtgagggcttacttggatca
ggaccggatgcaggcctactaaggataggtccatttccacgagaaggtcttctggggcca
ggtccagatatgcaagaaggacttttacggttaagaacatttcctcgcgaaggcctcctt
ggagatcgaccagtagcgcgagatggtcaaggaaggccagaaccagaaccagaatcccat
ggaagacaagaatctgatgcaaaagaacttcataattggcctggatcagatacacgagat
ggtcctgagtggtccagatctgatcttcgagaaggctggttgggtcctgaacccaaggaa
ggacttcattggcctggaccagaagggcatgatgcccaaagacgtccaccaccagatatc
catgaaattcttttaaggctaggtacacataccagggaaagtccgttaagaccaccattg
gatatgaggcagcattttgggcgaccactcctcgatgcaaggcagatatttctaaggcca
ccagtcgatgaaagagaacattttggaaggccacctatggatgccagggagacatttgga
aggccacccatggagggaagggaacattttggaagaccacccatggaaggaagacccctt
atagagggaagagaactctttggaagacctcctatggaaggaagagaaatgtttgttaga
ccccatatggagggaagggaaccttttgtgagaccccatatggagggaagggaacctttt
gtgagacccccaatggaaggaagagaggtctttgggagaatgcctctggagggaagggaa
cactttgagagactgccattagaaatgagagagaatcatggaaggcagtttatagaagct
cttggtagaagggagccctttggttttaacgcagataagccctggggacatagggatttt
gatgaaaggcagcaccttcctttacctgtgtttggaagcccacaaggctttcatgatgaa
agggagaggtttcatcttgggaacatcaggcctgattttagaggtggtcctatgtggaat
agaggagtagatcaagaagctctgagagatcatggtgagcgcaaaattcagcgtgaaaaa
caacgggatagagatgatcgagatgttgatttccgcaaagaaactaatagcaaccgattt
agaaaagagagggagcagggcacatgggttcctccaaagtcacaaatttctgaatatgtt
gaaggcaccactgccacctcacctaccaccacttctccgatgcctacctctttccctgaa
aaagttgaaaatgtgcctcaaataaacggtgaaagtgcagctatcgacacttcccaacca
tcagtggaatcaaaaaaggaacctgaactttctgataaattggtttcttcaaatgagaaa
agcaaagagaagagcaaagagaaggttgacactgatgcagaccaaaaatgtcagccagtg
gtagaaagcacagagactaaggggacataa
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