Pleurodeles waltl (Iberian ribbed newt): 138296260
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Entry
138296260 CDS
T10800
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138296260 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138296260 (HBS1L)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138296260 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
138296260
NCBI-ProteinID:
XP_069091299
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Position
5:complement(1033078779..1033492903)
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AA seq
618 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDVYGQSVEDDYCISPATASQFIYSKRGKPSAFAEPLEEEYG
EEQPDNAIPTLSCADQGRTKDSESTRSDSGILPKVTKMTVSGKKQTMGFDVPCAVSEENC
QSTTTPRKGQSAEDAAPLAPAALEATSKSPPPSQNNQTPNDLSTAIPAVKSISKSKQRID
VKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQESKKAGKAS
FAYAWVLDETGEERQRGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMITGAAQADVAI
LVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFNEITSKLG
HFLKQAGFKETDVAFIPTSGLGGENLVTKSKLSELTEWYKGPCLTEQIDSFKPPQRSVDK
PFRLCASDVFKDQGAGFCVTGKIEAGYVQTGEKLLAMPPNESCTVKGITLHDEPVEWAAA
GDQVSLTLTGMDIIKINVGCVFCGTKEPIRACTRFRARVLIFNFDIPITQGFPVLLHYQT
ISEPATIRKLVSVLHKSTGEVVKKKPKCLTKGQNALIELQTQRPIALELYKDFKELGRFM
LRYSGSTIAAGVVTEIKE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcaccggaatgtgcgcggatacaactacgacgaagattttgatgacgacgac
gtgtatggccagtctgtggaggatgattattgcatatcaccagcaacagcttctcagttc
atctactctaaacgtggtaaaccatcagcctttgctgagcctttggaagaagagtatggg
gaagagcaaccggataatgcaataccaacactcagctgtgctgatcaaggaagaacaaag
gattccgagtcaacaagatctgattctggaattttaccaaaggtcacgaaaatgactgtc
tccgggaaaaagcagaccatgggatttgacgttccctgtgcggtttctgaagagaattgc
caaagtaccaccacacctcgaaagggacaatctgcagaagatgctgctcctcttgctcca
gcggcactggaggcaacttccaaatctccccctccatcccaaaacaaccagacacctaat
gacctcagtacagccatacctgcagtgaaaagcatcagcaagtcaaaacaaaggatagat
gtgaaagcagagctcgagaagaggcaagggggaaaacaactgctaaacctagttgtaatc
ggtcacgtagatgctggcaaaagcactcttatgggacatctgctttacctcctgggaaat
gtgaacaaaagaactatgcacaaatatgaacaggaatcaaaaaaggctggaaaagcttcg
tttgcttacgcttgggtcttggatgagactggggaagaaaggcaaaggggtgtcaccatg
gatgtgggaatgactaaatttgaaaccaaaaccaaagtcattacgttgatggatgcacct
gggcataaagacttcattccaaatatgataacaggagcagcacaggctgatgtggccatt
cttgtggtggatgccagtagaggagagtttgaagcaggatttgaggctggtggacagaca
cgagaacatggtttgcttgtccgttcccttggcgtgacacaactagcagttgccgtgaat
aaaatggatcaggtgaattggcagcaagagcgatttaatgaaattaccagtaaacttgga
cactttcttaagcaggctggctttaaggagacggacgttgctttcatccctacaagtggc
ctgggaggtgaaaatctagtcacaaagagtaaattaagcgaacttacagaatggtataag
ggaccgtgcttgacagaacaaattgattcattcaagccacctcaacggtcagtggataaa
ccctttagattatgtgcatctgatgtttttaaagatcaaggagcaggattctgcgtgacc
ggtaaaatagaggctggctatgtccaaactggtgaaaaactactagcaatgccccctaat
gagtcctgcactgttaaaggaattacactacatgatgaacctgttgaatgggccgcagca
ggagaccaagttagtctcactttgactggcatggatataatcaaaatcaatgtcggctgt
gtgttttgtggtacaaaggaacctatcagagcctgtactcgtttccgggcacgggtgctt
atcttcaatttcgatatccccatcactcaaggttttcctgtgcttttacactatcagact
ataagtgaacctgccacaataagaaagttagtaagtgttctacacaagagtacgggcgag
gttgtaaagaaaaagcctaagtgcttgaccaaaggccagaatgctttaatcgaactacag
acccagcggccaatagctctcgagctgtacaaagactttaaggaacttgggagattcatg
ctgcgctacagtggctcgacaatagctgctggagtggtcactgagataaaagaatga
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