KEGG   Pleurodeles waltl (Iberian ribbed newt): 138296524
Entry
138296524         CDS       T10800                                 
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain
  KO
K08131  collagen type IX alpha
Organism
pwl  Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510  Focal adhesion
pwl04512  ECM-receptor interaction
pwl04518  Integrin signaling
pwl04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pwl00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    138296524 (COL9A1)
   04518 Integrin signaling
    138296524 (COL9A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138296524 (COL9A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138296524 (COL9A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:pwl00535]
    138296524 (COL9A1)
Proteoglycans [BR:pwl00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   138296524 (COL9A1)
SSDB
Motif
Pfam: Collagen Laminin_G_2
Other DBs
NCBI-GeneID: 138296524
NCBI-ProteinID: XP_069091822
LinkDB
Position
5:1428684444..1428982096
AA seq 926 aa
MERSGHAPALLYLFSLLGPFTSATIHHQTRFQQQMKADPDVEFCPVIHVGQDDVPGYDLI
SQFQIDKAADRGTIKKIPGSTILQTAYKLGTNIDFRLPTRTLYPDGFPEEYSFLATFRMT
GNTVKKNWSIWQIWDSYEREQVAVKINGQAKSIEFFYKGVDGRLHAARFFNLPFLFDSQW
HKVLISVENDRVSLFIDCINIETINTSPRATVNVDGYTLLGKLKSNPQISVPFDLQWMLI
HCDPLRPQRETCYELPARRAISQTGVARGPVGPKGLPGPPGPPGVPGIDGIDGERGVDGE
GPGPVGPDGEPGKAGAPGLPGLPGADGLTGPEGAPGPGGPLGPKGEPGLPGERGLVGSGR
PGPPGPDGSAGLPGELGRIGPLGDVGGRGQPGPPGPPGPRGTVALHEGDPLCPNACPPAR
SGYPGLPGMKGHKGVKGDAGEPGRQGHKGEEGEQGGLGDVGTQGGPGIQGLRGITGVQGS
KGNKGGRGLDGEPGPQGIAGATGDQGQRGPIGEMGPKGNNGAQGPRGITGMPGSKGEGGL
PGVDGRDGIPGLPGSKGESGKVGAPGESGLQGLPGIPGSPGAKGASGDKGASGAPGVAGL
MGNSGKPGERGPQGEVGPIGPFGPPGDRGETGPIGPPGPPGKLGPLGAPGFIGLPGPPGL
PGLKGDRGGVGEPGPSGEQGAAGEEGIAGEKGDQGDVGPPGAKGSTGNPGEPGNRGPEGS
RGQPGIEGPQGSPGPRGMQGEQGVPGLPGSQGPAGREPSDQHIRQVCMRVMQEQLAHLAA
SLRRPESGAAGLPGRPGPPGSPGAPGDNGFPGQVGPRGLPGLKGPPGEIGLKGPKGEMGE
RGERGFPSRGQKGLPGPPGPPGEPGKPSYGREGRDGERGPPGEAGLPGVPGAPGHPGQPG
YCDPSSCSLQAIASPLSEKDSNQKGP
NT seq 2781 nt   +upstreamnt  +downstreamnt
atggagagaagcgggcacgctccggctctcttgtatctcttcagtttgctggggcctttc
acctccgctacaatccaccaccagacaaggttccagcaacaaatgaaggctgacccagat
gtagagttctgtccagttatccatgttgggcaagatgacgtcccaggttatgacctcatt
tcgcagttccagatcgacaaagcagcagacagggggactataaagaaaatacccggatct
accatcttgcagacggcttacaaattagggacaaatatagacttccggctccctaccaga
actctgtatcctgatggatttccagaggaatattcatttctggctaccttccgaatgacc
ggaaatacagttaaaaaaaactggagcatctggcagatttgggattcttacgagcgtgag
caagttgcggtgaaaattaacggccaagcaaagtccattgaatttttttataaaggagtg
gatgggaggcttcatgctgcacggttcttcaatttacccttcctgtttgattcccagtgg
cataaagttttaatcagtgtggaaaatgacagagtgtcactctttatcgactgcatcaac
attgaaacaataaacacaagtcccagggctacagttaacgtggacggttacactttacta
ggcaagctgaagagtaacccacagatctcagttccgtttgacctccagtggatgctgatc
cattgcgaccctctgcggccccagagagagacctgctatgaactccccgccaggagagct
atcagccagaccggggtggcgagaggcccagttggacccaaaggactgccaggccccccc
gggccaccgggagttcctggcatcgatggaatagatggggagaggggtgtcgacggtgag
ggccctggccccgtgggtccagacggggagccgggaaaggcgggagcccccgggttgccg
ggactgcccggtgctgatggactcactgggccggagggagcacctggaccaggtggtcca
ctaggaccgaagggtgagcctggtctgcctggagaacgcggacttgtgggaagtggaaga
ccaggaccaccaggtcccgatggctcagctggacttcctggggaactcggccgcatagga
cccctgggagatgttggaggaagaggacaacctggtccaccaggcccaccaggaccaaga
gggactgttgctcttcatgaaggtgatccgctgtgtcccaatgcttgtcctcctgctcgt
tctggctatccaggcttacctggcatgaagggtcataaaggagtaaaaggagatgctggt
gaaccagggaggcaaggccacaagggtgaagagggcgagcagggaggtctaggagatgtt
gggacccaaggtggtccgggcattcaggggttaagaggcatcactggagtacaaggatca
aagggtaacaaaggtggacgaggacttgatggggaacctggtccccaggggatagcaggt
gcaactggtgaccaaggccagagaggaccaattggtgagatgggcccaaagggtaataat
ggtgctcaaggtccaagaggaataacaggaatgccaggttctaaaggagaaggtgggttg
ccaggtgttgatggtcgtgatgggatcccgggactgccaggttccaagggggagtcagga
aaagttggggctccaggtgaatctggacttcaaggattgccgggaattcctggaagtcca
ggagcaaagggtgcttctggagacaagggtgcttcaggtgctccaggtgtagctggcttg
atgggaaattctggaaaacctggtgagcggggaccacaaggggaagttggtccaattgga
ccttttggacctccgggtgaccggggtgagacaggtcccattggtcctccaggcccacca
ggaaaactgggtccgctcggcgctcctggattcatcggactgccaggccctccgggtctt
cctggactgaaaggtgaccggggtggagtaggtgagccaggcccctcaggagaacagggg
gcagccggtgaagaaggaattgctggtgaaaaaggcgatcagggtgatgtcggacctcct
ggtgccaaaggctctactggaaatcctggtgaacctggcaaccgtggccctgagggaagt
cgtgggcagcctggcattgaagggccccaaggatcgcctggaccgcgtggtatgcagggt
gaacaaggagttcctgggcttccaggaagtcagggtccagctggcagagaaccgagtgat
cagcatattaggcaagtctgcatgagagtgatgcaagaacaattggctcatttggctgct
agcctcagaaggccagaatctggtgctgcaggactacctggtcgacctggaccaccagga
tcacctggagcccctggtgataatggattccctggacaagttggccctcgtggtcttcca
ggtctcaaaggtcctcctggagaaattgggcttaaaggaccaaaaggtgaaatgggtgaa
agaggcgaaagaggattcccatcaagaggacaaaaaggacttcccggcccgccaggacca
ccaggtgaaccaggcaagccaagctatggtagagaggggcgtgatggtgaacgtggtccc
ccaggagaggctggtctgcctggagttcctggtgcccctggccatcctggtcaacctgga
tactgtgacccttcgtcctgtagcctgcaggcgatcgcctcaccgctatctgaaaaagac
tccaatcagaaagggccttga

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