Pleurodeles waltl (Iberian ribbed newt): 138299064
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Entry
138299064 CDS
T10800
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138299064 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138299064 (NUP188)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
138299064 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
138299064
NCBI-ProteinID:
XP_069093130
LinkDB
All DBs
Position
6:12958821..13601365
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AA seq
1741 aa
AA seq
DB search
MAAAGVSVSSSRELWTILLGRSALREPSQIDAELNRYWERLLDGLSYYRPPSSSSAEKVK
NDKNVAPSLKELGLRISKFLGLDEEQSVQLVQCYLQEDYRGTRDSFKSVLQDERQSQALM
LKIADYYYEERLCILRCVLNLLTYFQDERHPYRAEYLKCVDKLEKDLIPNTRKQFEDLAK
AEAPTWETHGNLMTERQVSRWFMQCLREQAMLLETIFLYYAYFEMSPAELLTFTKIFKEQ
GFGRRQTNRHLIDNTMDSTVERIGYFSSLILVQGMDMYSLQQCALDDRAHEHPFASAEII
CQEMDSLLLTFGDIPHHAPVLLAWALLRYTLNPDGSGHVIRRMGSTAIQMNVFPHLTQML
RTLGSGGNNYTASTVCLCIYGLLSFVLTSLEEHTLGKQQDLIDTACEVLAAPSLPELFWS
TEPSTGLGILLDSVCGMFPYRLTPLLQLLTSLVSDKSTAKKVYSFLDKMSFYTELYKHKP
NDVIAHEDETLWRRRAPKLLYALGVGQTNLRIPQGTLGQVLMEGQAFLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPILDLVHKVISTDLTTADCLLPITSRIYMLLQRLT
TVINPPMDFVASCVRCLSVLATRMPAKVWIDLHHTGFLPFVANPASGTGCLISTDGMNAG
AYGNLLMGIEQPQGEYAVTISFLRLVTTLIKGQLGNTQSQGLVPCILFVLKEMLPNYHKW
RYNAHGVRERIGCLILELIHAILNLCSDEDPQSRSSPSLQSLCIFSLANTEAGQAVVNIM
GIGVDTIDAVMAAQPSSTGSEGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQSLTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGTEAAAIRDAFLT
RMQSRTEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDASKGSKEFSLGEWSCLQVVL
ELIDSKQQGHYWCPPLLHRAAIAFLHALWQDRRDSAMTVLRIKPKFWENLTSPLFGILSP
PVETSEPCILETCAFIMRIICLEIYYVVRGSLHPSLKDILQRFSTEKRYAYWSEYVKSLV
CHVAETEGAGCASLQEYQMLISAWRMLLIVATSHADVMHLADSGVHQQLFLDVLEGTEVL
LLVPTSVPCLRLGSMLCTLILILLKQWARELGSAGDILPSLVQILDGALQADPQLMEKTK
AKVLAALLTVLQRRQLRASQIPRYSQLLLSLCETLQDEAVALLDQTRHELGTEEATEDKD
SMETDDGLRLKHKDQRDGVCVLGLHLIKELCEVDEDGELWLQVTRRLPLFPTIFSTLEVS
LRVKQNLHFAEAALHLLLTIAKTQQGAAAMAAAGVTQSFCLPLLSLYQLSSNGGLPTTMS
GASRKALDAPSWPGVYRLCMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQ
SLACLEEADQTVGFLLQLSGFSKEWQFHLPQLMKDIQVSLCYLCQACTSLLYSRKMLKHY
LQTRNGEALQPAGPPRAQRTAHTPSKQASAESEATEQRALRTVQHSLLKILSKTLAALRH
FTPDVCQILLDQSLDLAEYNVLFALSFTTPAFDSDIAPTFGTLLATVNVVLSMLGEVDKK
EPPSQAQGLFSSTEENKTLKSLLMFIMENCFYLLISQAMRYLRDPAVHTRDKQRMKQELS
SELSTLLSSLSRYFRRGGPSSPAGGVLPSPQPKAASSTKVGPEGQEPLIQLVQAFVRHVQ
R
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgccggggtgtccgtgagcagcagtcgggaattgtggaccatcctgttggga
cgttctgctttaagagaaccatcgcagatcgatgctgagttgaacagatattgggagcga
ctgctggatggactttcctactacagacctcccagttcgagttctgcagaaaaagtcaag
aatgacaagaatgtggccccttcactgaaggagctgggcctgcgcatcagcaagtttctt
ggtctagatgaagagcagagtgtgcagctggtccaatgctaccttcaagaagactacaga
ggaaccagagattcattcaagtctgtcctacaggatgagaggcaaagtcaggccctgatg
ctgaagatcgctgattactactatgaagagaggctctgtattctgcgctgtgtcctgaac
ctgctgacgtacttccaggatgagcgccacccttaccgggcagagtacttgaagtgtgtg
gataaactggaaaaggacttgataccaaatacgcggaagcagtttgaagatctggctaaa
gcagaagctccaacatgggagactcatggtaatctcatgacagagcgccaggtgtcccgt
tggttcatgcaatgtctccgggagcaggcaatgcttctggaaaccatctttctgtattat
gcctacttcgagatgtcacctgcggaactgctgaccttcaccaagatcttcaaagagcag
ggctttggtcgccggcagacaaatcgacacttgatagacaacactatggattccaccgtg
gaacgcattggttacttcagctctctgattctggtgcagggcatggacatgtactccctg
cagcagtgtgccctggatgaccgggcacatgaacacccctttgccagtgcagagatcatc
tgccaggaaatggacagtctgttgctgacttttggagacatccctcatcatgcacccgtg
cttctggcgtgggccctgctgcgttacaccttaaaccctgatggatctggccatgtgatt
cggcgcatgggcagcacagccattcagatgaatgtattcccacacctaacacagatgctg
cgaaccctcggcagtgggggaaacaattacactgccagcaccgtctgcctgtgcatctat
ggactcctctcgttcgttctgacctccctggaagaacacaccctgggcaaacagcaggat
ctgattgacacagcgtgcgaagttctagcagctccgagcctccctgaactcttttggagt
acggaaccatccactggccttggcattctgttggacagtgtgtgtggaatgtttccctat
cgccttacaccgcttttgcagctcctcacttccttggtttctgacaagtccactgccaag
aaggtgtacagtttcctagacaagatgtctttctacacagagctgtacaagcacaaaccc
aatgatgtgattgcgcatgaagatgagacgctgtggaggagacgggcacccaaactcctc
tatgcacttggtgttggccagacgaacctgcgcatccctcagggcacactcggtcaggtt
ttgatggaaggtcaggcattccttgtccgttgggagtactcctacagcagctggacatta
ttcacttgtgagattgagatgctcctgcacgtggtctccacagcagatgtgatccagcac
tgccagagggtgaaacccatcctcgacttggtgcacaaagtcatcagcacagacctgacc
actgcggattgtctccttccaattacatccaggatttacatgctgctgcagcggttaaca
acagtgatcaaccctccaatggattttgtggcttcttgtgttcgatgtctttcagtgcta
gctacccgtatgccagcaaaggtatggatcgatttacaccatactggattcttaccattt
gttgcaaatcctgcctccggcaccggttgcttgatcagtactgatggaatgaacgctggt
gcatacggtaatctgctgatgggcattgaacagccacagggggaatacgctgtcacaatc
tcgttccttcgccttgtcacaaccttgattaaggggcagcttggtaacacgcagagccag
gggctggtaccctgcatcctctttgtcctgaaggaaatgctacccaactaccacaagtgg
cgctacaacgcccatggagtgagagaacgcattggctgcctgatcctagagctgatccac
gctatcctgaatctgtgttcagacgaggatccacagagccgcagttcccccagcctgcag
tctttgtgtatcttcagcctggccaacaccgaggcggggcaggcagtggtgaacatcatg
ggcatcggagtggacaccatcgacgccgtcatggctgcgcagcccagcagcactggttcc
gaaggccaggggcagctcctcatccagaccgtgaaactagctttctcggtcaccaataat
gtcatccgcctgaagccaccctccagcgttgtctctcctctggagcagtctctcactcaa
cacggagctcatggcaataacctgattgctgtcttggccaaatatatctaccacaaacat
gacccagcccttccgcgccttgccatccagctactgaaacgcctcgctacggtagcccca
atgtctgtgtacgcctgtctcggaactgaggctgctgccatccgcgatgcattcctcacc
cgcatgcaaagtcgaacagaggatatgcgtattaaggtcatgatattggagtttctcaca
gttgcagtggaaacacagccaggcctcattgagctcttcttgaaccttgaagtgaaagat
gcaagcaaagggtccaaggaattcagcctgggggagtggagttgcttgcaggtggtactg
gaactgatcgactcaaagcagcaggggcactactggtgcccccctctcctgcatcgtgct
gccattgcctttcttcatgccctgtggcaggaccgtcgggatagtgccatgactgtcctc
aggatcaagcccaagttctgggagaatttaacaagccctctcttcggaatcctttctcca
ccggtggagacctcggagccatgtatcctggagacgtgcgccttcattatgagaattatt
tgcctggaaatttactacgtggtcaggggatctctgcatccatccttaaaagacatcctg
cagagattctccactgagaagcgttatgcttactggtcggaatacgtgaagtcgttggtg
tgtcatgtggctgaaaccgagggtgcgggctgcgcctcgctgcaggagtatcagatgttg
atttcagcctggcggatgctgctgatcgtcgccaccagccacgcagatgtgatgcacttg
gctgattctggggtccatcagcagctgtttctggatgtcttggaagggacagaagtactg
ctccttgtgcccacatcagtgccttgtctgcgcctcggatccatgctctgcacattaata
ctcatcctgctgaaacagtgggcacgtgagttggggtctgccggagacatactgccatcc
ttagttcaaattctggatggggccctgcaggccgaccctcagctgatggagaagaccaaa
gcaaaggtgctggcagctctcctcactgtgcttcagaggaggcagctgagagcgagtcag
atcccacgatactcgcagctgttgctgagcctgtgtgagactctgcaggatgaggccgtt
gcactgctggaccagacgcgccacgagctcggcaccgaggaggccacagaagacaaggat
tccatggagacggacgatgggctgcgactcaaacacaaggaccagcgtgatggggtgtgc
gttttggggctgcacctgattaaggagctgtgcgaggtggatgaagatggggagctctgg
ctgcaggtgaccagaagattgcctctgttcccgactattttcagcacgctggaggtcagc
cttcgggtgaagcagaacctccacttcgccgaggctgcgttgcaccttcttctgaccatc
gccaagacacagcagggtgctgctgctatggctgctgctggggtgacacagagcttctgt
ctacccctcttgagcctctatcagctgagcagtaatggaggtttgccgactacaatgtcc
ggtgcatctcgaaaagctctggatgctccctcctggccaggagtgtaccgcctctgcatg
tccttgatggagcgcttgctgaagacacttcgatacaacttcctgaccgaggccctggac
tttgtgggcgtccatcaggagaggattcttcagtgcctcaatgctgtgaggacagtgcag
agcctcgcctgccttgaagaggccgatcagaccgtgggcttcctgcttcagctctctggc
ttctccaaggagtggcagttccatttaccacagctgatgaaggatattcaggttagtctc
tgctacctctgccaggcctgcacgtcccttctgtacagccgcaagatgctaaaacattac
ctacagacgagaaatggcgaagctctccagccagcaggacctcctcgtgcgcaacgcact
gctcacacgccttcgaagcaggcaagtgcggagtctgaggccacggaacagagggccctg
cgcacggttcagcacagcctcttgaagatactcagcaagacgctggcagccctgagacac
ttcaccccagacgtgtgccagatcctgctggaccagtcactggacctggcagagtacaat
gttctgtttgctctgagcttcacaacgccggcctttgattcagacatcgcacccacgttt
gggactcttctggccactgtcaacgtagtgctgagcatgcttggggaggtggataaaaag
gagcctccctcacaagcgcaaggactcttctcatccacagaagaaaacaagaccctcaag
tctctccttatgttcatcatggagaactgcttctacctgttgatctcacaggccatgcgc
tacctccgggacccagctgtgcacacgcgcgacaagcagcggatgaagcaggagctgagc
tccgagctgagtactcttctttccagcctttcccgttacttccgtcgtgggggaccgtca
tcaccagctggaggcgttctgccatctcctcaaccaaaagctgcatctagcactaaagtg
gggcccgaggggcaggagcccttgatccagctggtgcaagcctttgttagacatgtgcag
agatag
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integrated database retrieval system
