Pleurodeles waltl (Iberian ribbed newt): 138299097
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Entry
138299097 CDS
T10800
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138299097 (SETX)
5.6.2.5 RNA 5'-3' helicase
138299097 (SETX)
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138299097 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
138299097
NCBI-ProteinID:
XP_069093205
LinkDB
All DBs
Position
6:complement(29033976..29452986)
Genome browser
AA seq
2845 aa
AA seq
DB search
MSTCRWCTPSGFSTSEFLKQYATNSLSREDFLSANDDLSYCLECVVEYHKARDELPTLHK
VNHSTPPSTCLSVVGPQALWEAETSRLVAQFEKTMKDESIEDEELFFVEEDGETKLPEFV
GPEFENNLRVPLLEVLKYPYLLLDERLSELCVEALCKMERVGYSFQVFDKHPGIYLLLVH
PNELVRRWAILTARSLGKVDRDDYYDLQEVFTCLLKVIELGLFDSPDIYSFYSVEKGKLI
LLPSHLYDTNNYKNYWLGICMLLSVLEEQTLDSLLLGPDKQNDFMQSILHTMERDTAGNG
DDPFWPALHCFMVILDRLGAKVWGQLIDPIQAFQTIIDSRSYKNEIENIRHSTRRTKIEP
DSDYGDDQVTCSQIVYDFNAEKPKKDSGWRNAICPDYCPNMYEEMQTLTNVLQSDIGQDM
RVHNSTFLWFIPFVQSVMDLKDLGVAYIVEVIHHLYSEIKDVLNKRVEYCDKVTEFFILI
LVSVIELHRSKKCLHLLWVSSQKWVEALVKCAKLPATDFRRYSEKVPGTCPRISSTSSST
VLSMHPQATNSVQYSCVQLIRSLLREGSQLGQQSSCKRFLDKLNLLLRGNVFVGLQLSEK
ETQDLQICLKQVIRSSKDRNSLNTPSFAEQNSIDRSPGFNLSKVKSEGTDEWSRMRTYCQ
QNSPSPPSPAESRSNEGCAQSPSSHRRSSSCGEEPCFDEPTLCGDGVFPFSKIDSDFNML
CERDTMCEHSQETNTGKNVQDYKQNPVNECIMGKTSSQTDCSPDNLITTVTTESARERRC
ELSAGTPNLLLSNQGVGEASTNKGAQKPSSVSDPALNSLKLKIPSVRLLDLHSKLAKAME
KSSAFLKLQKGNENLETQRCQKQSGIQVARLDKDQSADCADKSERVLESKSCASEGHSLF
KPLLNSTLQIKNEPQESRMDLQVSDTKSKDKVSESDSDDNLPLSKLKNTFSRRNESPLGS
DKLTECSLYGKLGLFAGKQSPNSSEKRTEKSSGLVMRVSPIKLRDLQIEVGNNCKKTKEL
TRASESDSDDSIPLMQVRLNLINQRKSLPLNLDTSEDSDSDVAKMTEASITRGAELLLDS
RADTKALPSDDHIERKVKGAIRSSVVEAPHKSCDAHKEIIIISDSTDEEEYDEEDTIPNL
FKTIKKEKPFLVSESSDTQPLSAPVPLSGPKGIKQEVLGKETSPDRCDQYDSQMFEFETE
DEVYSVWQDSQIEKPQSPGPEDQVRDSASTSTENNNQEELDMLDKYTEWGYDTDYIPEDA
LEEAAEAAEEQLEKEHADQKFLEGENIASFSKNQSHLEHHARSQCVKKTSKPVLPRPADI
SARTKPLLGSKPSHGKSIDDKANSFTKKVDKSSKVRTGNLTKSSDKAVQRTVKQKQREVA
QATQRTPVIPRTTPAVVPPKKDRKLPEPSSTVEKLGFKKPPRRAFDLSQRSLDSLTELRN
HGKTAGALEIKPKQKSMLISPQALPVKGNRKLLACQDRQFYCQIRPQERTGKRIEEASKV
KDRNNQPRVMAKVSKKKVQDVTSAVTLSKQSLEKAVPSNTPFSSKEMQFNSPVTDNIKKA
KNVNIVSPITHGPLASESTHPAPSAEVDLPCLPPIVTASGMLVHGSSKDDYYETHHASSS
AGDQQSSSLNEERGSLSEDEEEMEQDNLFLTQPDPVDMEICSQSESGGIIETCSNHEQSD
MEVDAPGVNSTDVALPSEFYKCKQSECAEVVKMAGSYCHKHDIVETSADHVFAVPDLPPL
CSKPAKPPTAKVFSSGISSRSTNLTKDLENMPKALVASKTRPLVSKTSTPKMNPPVLIRD
MASRHPSPCAVLQDLNNHSNIAMGWQTGRVSSGSSGNGLHPQRVLCTSYSPAKQRDSSFL
IQEILCWDHGMFTSFNQFGAPSNLSQFPCSNVPLYFSGYEEYFRIFFPLLMLNTFESMVQ
EWQENQRRKFRSPYRLLLQNFCTDSPMNRVDFQVWIRDVDLAKQCHVKDDDLIFLVKPQS
SDSVDGEMRGQPIYYIGHVAHFTRSQLNETRDGDKYTACQLSVQTKGHFAGARNQEVICE
VIGGLVSTQRQFKALLQLRWSPLAKSIINPNPPEFLPKTKVNLAEGGIFSYSKDYNESQK
KAIETAYTMVKHHPGLPRIGLIHGPPGTGKSKTIVGLLNRILCENPPSDNKTPNMNIKNK
RNRILVCAPSNASIDELMKKIILGFKEKCKDKNHAQGNCGDINLVRLGSEKAISSDVQRF
SLDSQVSRRMNKNTFGLDQDIQKKKEALDQLLDDLSRRRAIDWCDKQKKNEDLDQQIGRV
AAERQQLASQLKEVRKHLPEVQSKIILESDIICCTLNTSGSFLLETAFRRLGHDPFSCVI
VDEAGQACEVETLIPLIHRCSKLILVGDPEQLPATVISTKAEEYGYGQSMMARMRTRLEQ
SALKTPVLLLTVQYRMHPDICLFPSAYIYGKTLQTDRMTEELRCSSQWPFQPYLLFDVSD
GTERRENESSYANFQEVKLVITLIKLLKDKKKDMGFHNIGIITPYRAQKNMIIKELAREF
GVPNRHGEVDTVDGFQGRQKDCIIVTCVRANSCQGSIGFLASRQRMNVTITRAKSSLFIL
GSLKTLMENKDWNHLIQDAQRRGAIIKTREENYSKDATKILKLKPSFLRSHSFPSAEEAK
KPSSSRPQHTPPQTERKESQSGSTPSLPVLAPHVHRTTSAPPEAVRQPLGSKRMPGSAPA
TVTPTAPVPSRGPSLPNERPRDPRLSRKPEPAAVVTQASHTGHTLPPGSGHLTGHAQTIL
PHRTAGGSGTPRTPQTISASGSDRNMDTRPSWQANRNQAPGNWKSSTENRRWDKNQDNRP
TNKRREHSPQSDDAKRQKTSNYNLK
NT seq
8538 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgctggtgcacacctagtggcttctccaccagcgagttcctgaagcag
tatgcgaccaacagcttatctcgtgaggacttcctgtctgccaacgatgacctcagctac
tgcctggagtgtgtggtggagtaccacaaggccagagatgaacttcccacattgcacaag
gtgaatcacagcacacctccctcaacctgcctctcagtggttggcccacaggccttatgg
gaggcggaaacgtctcgcctcgtcgcccagttcgagaagacgatgaaagatgagagcatt
gaagatgaggagttgtttttcgtggaggaagacggggagacgaagctgccggagttcgtg
gggcccgagtttgagaacaacctgcgggtgccgctcctggaggtgcttaagtacccgtac
ctgctgctggatgaacggctcagtgagctgtgcgtggaagccttgtgcaagatggagaga
gtcgggtactcattccaggtctttgacaagcaccccggcatctacctgctcctggtgcac
cccaatgagctggtccgccggtgggcaatcctgacagccaggagtttgggcaaagtggac
cgcgatgactactatgacctgcaggaagtcttcacctgtctcctcaaggtcattgagctg
ggcttgtttgatagtccagatatctacagcttttactctgttgagaaagggaaactaatt
ctcctgccttcacatctctacgataccaacaactacaagaactactggctgggcatctgc
atgctcctctcggtgcttgaggagcagaccctggattcactgctgctaggcccagacaag
cagaatgattttatgcagtccattcttcacaccatggagagggatactgcaggtaatgga
gatgatcctttttggccggctcttcactgcttcatggtgatcctggacagacttggtgcc
aaggtctggggacagctgatcgacccaatccaggccttccagaccatcatcgacagtcgg
agctacaaaaacgaaattgaaaacattcggcacagcaccaggagaactaaaattgagcca
gactcggactatggtgatgatcaagtgacttgcagccagattgtgtacgacttcaatgca
gaaaagccaaagaaggactcaggttggaggaatgccatttgtccagattactgccccaac
atgtatgaagaaatgcagacccttactaatgtacttcagtcagatattgggcaagacatg
cgtgtgcacaacagcacctttctgtggtttattccttttgtgcagtcagtaatggatctc
aaagaccttggtgtagcctacattgttgaagtaattcaccatctctactctgaaatcaag
gacgtccttaacaagagggtggagtactgcgacaaggtcacagagttcttcattttgatc
ttggtgtctgtcattgaacttcataggagtaagaagtgccttcatttgttgtgggttagc
tctcagaaatgggtggaagccctggtgaaatgtgccaagcttccagccacagatttcaga
cgctactctgagaaagtgcctggtacttgcccgagaataagttctacctcatcatctacg
gttctgtcgatgcatccacaggctacaaactctgttcagtactcttgtgtgcagttgatt
cgtagccttctgcgagagggatctcagctgggtcaacaatctagctgtaaacgtttcctt
gataaactcaacctcctcctgagagggaatgtttttgtgggcttgcaactgagtgaaaaa
gaaacacaagacttgcagatctgcttgaagcaagttattagaagttctaaagaccgaaac
tccttgaatactccctcatttgcagagcaaaattcaattgacaggtctccaggtttcaat
ttgagcaaggtaaagagtgagggtacagatgagtggtctaggatgagaacgtactgccag
cagaatagccccagcccaccctcacctgctgaaagtaggtcaaatgagggatgtgcacag
agcccctcttcccataggaggagtagtagttgtggggaagaaccctgcttcgatgagccc
accctgtgtggtgatggagtgtttcctttttcgaagattgattcagattttaacatgctc
tgtgagagagatactatgtgcgaacattcccaggaaacaaacactggcaagaatgtccag
gactataaacaaaatcctgtgaatgagtgcataatgggcaagacctcatctcaaactgac
tgcagtcctgacaatctgattactactgtcacaacagaaagtgccagggagcgaaggtgt
gaactatctgcagggaccccaaacctgttgctatctaaccaaggagtaggtgaggcaagc
acaaataaaggggcacaaaagccttcctcagtctcagatcctgccctaaattcccttaaa
ttaaaaatcccaagtgtgcgcttgcttgatctgcattcaaaactggcaaaggcgatggaa
aaatcttcagctttcctaaaactccaaaaaggaaacgaaaaccttgaaacgcagagatgc
caaaaacaatctgggattcaagttgcacgcttggataaggatcagtctgcagattgtgca
gataaatcagaacgtgtgctagagtcaaaaagctgtgcaagtgaagggcattcattgttt
aagccactcttaaattccaccctccagataaagaatgaaccacaggaaagccgtatggat
ctgcaggtttcagatacaaaatcaaaagacaaagtaagtgaaagcgatagcgatgacaac
ctaccgctttcaaagcttaaaaacaccttcagcaggcggaatgaatctcctttgggctct
gacaaattgacagaatgttcattatatggaaaactagggttatttgctggcaaacaatca
cctaattcttcagaaaagagaactgaaaaatcctcaggcttggttatgagggtcagtccg
atcaagttacgtgacctgcaaattgaagtaggaaacaactgtaaaaaaacaaaggaatta
acaagagcaagtgaaagtgacagtgatgactcgattccactgatgcaggtcagattaaac
ctaattaatcagagaaaatctctacctttgaacctagatacttcagaggactctgatagt
gatgtggccaagatgactgaggcatctatcacaaggggtgctgaactgctgctcgactca
agggcagacaccaaagcattgccatccgatgaccatattgaaagaaaggtaaagggtgcc
attcgctcctctgtggttgaagccccccataaatcttgtgatgcacataaagaaatcatt
ataatttctgattccactgatgaagaggaatatgatgaagaagacacaataccaaatctg
tttaagaccataaaaaaggagaagcccttccttgtgagtgaaagttctgacacacagccc
ttgtctgcgcctgtccctcttagtggaccaaagggaataaaacaagaagtgcttgggaag
gaaacatctccagataggtgtgatcagtatgattcccagatgtttgagtttgaaactgaa
gatgaggtgtattccgtttggcaagattctcagattgaaaagccccagtcacctggaccg
gaagaccaagtaagagactctgcttctacctcaacagaaaacaataaccaggaagaacta
gatatgttggacaagtacactgaatggggatatgacacagattacatccctgaggatgca
cttgaggaagcagcagaagctgcagaggaacagttggagaaagagcatgctgatcaaaaa
ttcttagaaggtgaaaatatagcatcattcagtaaaaatcaatcacacttagagcaccat
gcgcggtcacagtgtgttaaaaaaacaagcaagccggtgcttcctaggcctgcagacatt
tcagcaaggacaaagccactgctgggctccaaaccttctcatgggaaatccatagatgac
aaagcaaattcatttaccaaaaaagtggataaatcaagtaaagtcaggaccggtaacttg
actaaaagttctgataaagctgttcagagaacggtcaagcaaaaacaaagagaagttgct
caggctacccagagaactcctgtcattcctagaaccactcctgctgtggtcccacctaag
aaagaccgcaaactgcctgagccgtcatctacagtggaaaaacttggcttcaaaaagcct
ccccggagagcatttgatttgtctcagagatctttagatagcttgacagagttacgaaat
catggcaaaactgctggggccttggaaataaaaccaaagcaaaaatccatgttaatttct
cctcaggccctccctgttaaaggtaatagaaagttattggcttgtcaggatcgccaattt
tactgtcagataagaccccaggaaagaacaggcaaaagaattgaggaagcatctaaagtt
aaagacagaaacaaccaacctagggtgatggctaaggtgtcaaaaaagaaggttcaagat
gtaacatcagctgtgacattgagcaagcaaagtcttgaaaaggctgttcctagcaatacc
ccgttttcaagtaaagaaatgcaatttaactcccctgtgacagataatataaaaaaagct
aaaaatgttaacattgtctcaccaataacccatgggcctcttgcctctgaatctacacac
ccagcacccagtgcagaggtagaccttccctgcttacctccaattgtgaccgcctctggc
atgttagtacatggtagttccaaagatgactattatgaaacacaccatgcttcatcttct
gctggtgaccaacaaagttcatctctgaacgaggaacgtggttcattgagtgaagatgaa
gaggaaatggagcaagataatttatttctaactcaaccagaccctgtggatatggaaatt
tgttcacagtcagaaagtgggggaataattgaaacctgctcaaaccatgaacagtcagac
atggaggttgatgctcctggagtaaattctacagatgttgctctcccatcagaattctac
aagtgcaagcaaagcgaatgtgctgaagtggtgaagatggctggatcttactgtcataag
catgacatagtagaaacctctgctgatcatgtttttgctgtgcctgacctgcctcctctt
tgctctaaaccagcaaagccacctacagcaaaggttttcagctctggtatttcttcgcgg
agtacaaatcttacaaaggacctggaaaacatgcctaaggccctggtggcctctaaaacc
agacctcttgtttctaagacttccaccccaaaaatgaatccccctgtgttaattagggac
atggcctctcggcaccctagtccctgcgctgttctccaggatctgaacaaccattccaac
attgcaatgggttggcaaactggtcgtgtatcttctgggagttctggaaatggtctgcac
cctcaacgtgtactttgcacctcctactctccagcaaagcagcgtgattcaagtttcttg
atccaagagattttgtgctgggaccatggaatgttcacaagcttcaaccagtttggagca
cccagtaatctcagccagttcccctgtagcaatgtcccgctttatttttctgggtatgag
gaatacttccggattttctttcctctactgatgctcaacacatttgaatcgatggtacaa
gaatggcaagaaaaccaaaggagaaagtttaggtccccttaccggctactgctgcaaaat
ttctgcacagacagtccgatgaaccgtgtagatttccaagtttggattcgggacgtagac
cttgctaagcaatgccatgtgaaggacgacgacctgatcttcttggtgaagccccagagc
agtgactctgtggatggcgagatgcgtggtcagcccatttattacattggccatgtggca
cattttacccgctcccagttgaacgagacacgggatggtgataaatacacagcctgccaa
ctttctgtccaaactaaaggacattttgcaggtgcccgaaatcaggaagtgatttgtgaa
gtgataggtggcctggtgtctacacagcgacagttcaaagctctgctgcagttgcgatgg
agcccgcttgctaaatcaatcatcaacccaaatcctccagagttcttacccaagaccaaa
gtcaacttagcagagggcggcattttttcctactcaaaagactacaacgaaagtcaaaag
aaggctattgagactgcttatactatggtcaagcatcacccaggtcttccacggatcggt
ttgattcatggcccacctggtacaggaaaatccaagactattgtgggacttctcaaccgc
attctctgtgagaatccacccagtgataacaaaacaccaaacatgaatataaagaacaaa
cggaaccgcatcctggtgtgtgccccgtccaatgcaagtattgatgagcttatgaagaag
attattttggggttcaaagagaaatgcaaggacaaaaatcatgctcaaggaaactgcggg
gacatcaaccttgtgcgtcttgggtctgaaaaagccatttccagcgacgtccaaaggttc
agtctggacagccaagtcagtcgcagaatgaacaagaacacttttggtcttgaccaggat
attcaaaagaagaaagaggccttggatcagttgctggatgatctttctcggcggcgtgcc
attgattggtgtgacaagcagaagaagaatgaagaccttgatcaacaaattggccgagtg
gctgcggaaaggcaacaactggccagtcagctgaaggaggttcggaaacacctcccagag
gtccaaagcaaaatcattttggagtcagacatcatttgctgcaccctgaacaccagtggc
agcttcctgctagaaactgctttccggaggttggggcatgaccccttcagctgcgttata
gtcgatgaggctgggcaggcttgtgaagtggagacactcatccctcttatccaccgatgt
tctaagctcatccttgtaggtgacccagagcagctcccagccacggtcatctccacgaaa
gcagaggagtatggctatgggcaatccatgatggcacgcatgcgcactcgcctggagcag
tctgccttgaagacaccagtgctgctgctgacagtgcagtaccgcatgcatccggacata
tgcctcttcccatccgcttacatctatggcaaaaccttgcagacagacaggatgactgag
gagctcaggtgttcgtcccagtggcccttccaaccataccttttgtttgacgtatctgac
ggtacagaacgacgggaaaatgaatcatcctacgccaatttccaagaagtaaaactggtg
attacactcattaagttgctgaaggacaagaagaaggatatgggctttcataacattgga
attataacgccctaccgtgcccaaaagaacatgatcattaaggagcttgccagggagttt
ggtgtgcctaaccggcatggggaagttgacacagtggatggtttccagggacgccagaaa
gattgcatcattgtgacctgtgtccgagcaaacagctgtcagggttccattgggtttttg
gccagtcgacagcggatgaatgtgacgattactagagccaaatcgagtctcttcattctt
ggaagcttgaaaacattgatggaaaataaagattggaatcatctgatccaggatgcacag
agaaggggtgctatcatcaaaaccagagaagaaaactacagtaaagacgccaccaaaatc
ctcaaactgaagccatcttttctgcgcagccattcttttcccagtgctgaagaagcaaaa
aagccatcaagtagccgacctcagcacaccccacctcaaaccgaaagaaaggagagtcaa
agtggttcaactccttcattgcccgtgctggctcctcacgtgcacaggactactagtgcc
cctcctgaggcagtgcggcagcccttgggttctaaaaggatgccaggctcagctccagca
accgttacccctactgcaccggtgccatctagaggaccatcattgcccaatgagcgacca
cgcgacccccgtctatcccgaaaacctgaacctgcagcagtggtcactcaagccagccac
acaggacacacattaccacctggctccggccacctcacaggacatgcacagaccatactg
ccccaccgaactgctggaggctcgggtacaccgaggactcctcaaacaatttcagccagc
ggcagtgatagaaatatggacaccaggccgtcgtggcaggcaaataggaaccaggcacca
ggtaactggaaaagttccactgaaaataggcggtgggataaaaatcaggacaaccgtcct
acaaacaaaaggagagaacactcaccgcagagtgatgatgcaaaaaggcaaaaaacctca
aattataacctcaaataa
DBGET
integrated database retrieval system
