Pleurodeles waltl (Iberian ribbed newt): 138299147
Help
Entry
138299147 CDS
T10800
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138299147 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138299147 (SKIC2)
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138299147 (SKIC2)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138299147 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
138299147 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
138299147
NCBI-ProteinID:
XP_069093309
LinkDB
All DBs
Position
6:44636244..44856416
Genome browser
AA seq
1251 aa
AA seq
DB search
MELERLKLPPRDPLDLPLTILEVGCAGRFELITEPEERNGAIFPLSTLPNGLPPYAVDIL
SETEQRYLSDPEWLPIHHFEKSQRVWPREKDVHSLYSLDVTPVHSVLQVDRNPTTGDLLG
FKEVMLDDTGLSAKNSLSLHRPPGPLTEAVRGSTTNYPFWPGGMDEPTLDQILTRGDQEE
DLDFEKDLLTVPPGWKKGMNFKQKESQASPAMLNLTNLLGALEDFEFGDLSDEEEEKKPL
PEKVPEETKATLHRTNSLEDLVLQTSVTSSQPAQTKGPEEPAPVLQEQWAVPVDISCPVD
DFYKRIPDPAFRWPFELDVFQKQAILHLENHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFQDVGLLTGDVQIHPDGSCLIMTTEILRSMLYNGSDVI
RDLEWVIFDEVHYVNDAERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKCKK
IYVISTLKRPVPLEHFLYTGNSQKTQNELFLLLDAKGNFLTKGYYAAVEAKKDRTSKHAQ
SFGAKQPHQGGPTQDKSVWLSLIDMLRKKDQLPVVAFTFSRNRCDDNASMLTTIDLTTSA
EKSEVHVFFQKCISRLKGTDRQLPQVLHMVELLKRGIGVHHSGILPILKEVIEMLFTRGL
VKVLFATETFAMGVNMPARTVVFDSIRKHDGSNFRDLAPGEYIQMAGRAGRRGLDTTGMV
ILLCKARVPEMSDLHKMMLGKPTHLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHT
RKDSKIHEHRISELTKVLSSMEEVECVGQLCDLERYFTAVRELKYTREIIQRKVMESVNG
LKTLTVGRVVIVNNRQHKNALGVILQVSSDATNRTFTTLVLCEKRPEGLAEEQEERKPEA
PMPDDLLNKKLFIPEGPCSHRVEKLQPSDINGITIIALRIAAEKILDDFNKRQIPRFRND
PPGPSVTTTTQELLRYAESNPDGLQCLDAINDLQLKEMEVVEGCLRGRHLEETLGTFTCV
HSPRFSPQYLRLQERMKIKDELEQLRYLLSDQSLALLPEYEQRINVLKALNYIDQGGAVQ
LKGRVACEISSHELLVTEMVFENVLSELRPEEIVALLSCMVFQQKTHVEAEINEVLKKGI
ERIRGVAERVAILQRECGMRESVEDFVEQYKFGLVEVVYEWARGLPFAEIAKLTDVQEGI
VVRCIQRLDETCRDVRNAARIIGDPVLYAKMEEASNMIKRDIVFAASLYTQ
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggagctggagagattgaagctccccccgagggatcccttggatcttcctctcaccatc
cttgaagttggttgtgcaggacggtttgagctcatcacagagcccgaggagcgaaatggt
gccattttccctctttctacgcttcccaacggcctcccgccctatgctgtggacatcctt
tcagagacagaacagcgatacttgtctgatcccgaatggctacctatccaccacttcgag
aagtctcagagagtgtggcctcgggagaaggatgtgcactctctgtactctttagatgtc
actccagtgcactctgtgctgcaggttgaccgaaacccgaccacaggagacttactggga
ttcaaagaggtgatgctagatgacacagggttgtcagccaagaattcactttccctacat
cggccaccaggtcctctcactgaggcggtgaggggcagcaccaccaactaccccttctgg
ccaggtggcatggacgagccaacccttgaccagatcctcaccagaggagaccaggaggag
gacctggattttgaaaaagatctactgacagttcctcccggctggaagaagggaatgaat
ttcaagcagaaagaatcgcaggcttcccccgccatgctgaatcttaccaacctgctcggt
gccctggaggactttgaatttggagacttaagtgacgaagaggaggagaagaaaccgctg
ccggaaaaggttccagaagagaccaaagctacactacacaggaccaacagcctagaagat
cttgtgctacaaacttcggtcaccagctcccagcctgcccagacaaagggcccagaggag
cccgccccggtcctgcaggagcagtgggcagtgccagtggacatcagctgcccggtggat
gacttctacaaacggatcccagaccccgcattccggtggccattcgagctcgacgtcttt
cagaagcaagccatcctccacttggagaaccatgactctgtctttgtggcagcccacaca
tctgcgggcaagacagtggtggccgagtatgccattgccctctcccagaagcacatgacc
aggaccatctacacctcacccatcaaggccttgtcgaaccagaagttcagagacttcaag
aacacgttccaggatgtggggttgctgaccggagatgtccagatccatcccgatggctcc
tgcctcatcatgaccactgagattttacgctccatgttgtacaacggttccgatgtcatc
cgagacctggagtgggtgattttcgatgaggtccactatgtgaacgacgcagagcgtggt
gtggtgtgggaggaggtgctcattatgttgcctgaccatgtcaacatcatcctgcttagt
gccactgtccctaacaccttggaatttgctgactggattgggaggataaagtgtaagaag
atctatgtgatcagcaccctgaagagacctgtccctctggagcacttcctgtacacgggt
aacagccagaagacacagaatgagctgttcctgctgctggacgccaagggcaacttcctg
acaaaagggtactatgctgctgtggaagccaagaaggaccgcaccagcaagcatgcccag
tccttcggcgccaaacagccccaccagggtgggcccacccaggacaagagtgtctggctc
tcgctgattgacatgctacggaagaaagaccagctgcccgtcgtggccttcaccttctcc
cgtaaccgctgcgacgacaacgccagcatgctgaccaccattgacctgaccaccagtgcg
gagaagagcgaggtccacgtcttcttccagaagtgcatctccaggttaaagggcactgat
cggcagctgccacaggttctgcacatggtggagctgctgaagaggggcatcggcgtgcac
cacagtggcatcctgccaatcctgaaggaggtcattgagatgctgttcacaagggggctt
gtcaaggtcctgtttgccacagaaacctttgccatgggtgtgaacatgcctgcccggacg
gtggtatttgactcaatccgcaaacacgatggatcaaattttcgtgatttggcacccggg
gagtacatccagatggcagggcgggctgggcggcgagggcttgacaccactggtatggtt
atcctcctgtgtaaggccagagtgcctgagatgtctgaccttcacaagatgatgctgggt
aagcccactcacctgcagtcccagttccgtctcacttacaccatgattctaaatctgcta
cgggtggaggcgctgcgggtggaggacatgatgaagcgcagcttctctgagttccacaca
aggaaggactccaagattcatgagcacagaatttctgagctaaccaaggtgttgtccagc
atggaggaagtggaatgcgttggacagctgtgcgacctggagcgatacttcactgcagtg
agagaacttaagtacactcgggaaattatccagagaaaagtcatggagtctgtaaatggt
ctgaagactttgacggtcggacgagtggtgattgtcaacaaccggcagcacaagaatgca
ttgggtgtaattttgcaggtttcttctgatgctacaaacaggacattcaccacactagtt
ctctgtgagaagagacccgagggacttgcagaagaacaagaggaaaggaagccagaggcc
ccaatgccagatgaccttttgaacaagaagcttttcataccagagggaccatgtagccac
cgtgtggagaagctgcagccgtctgacattaatggaatcaccataatagccctgcgcatt
gcagctgaaaaaatcttggacgattttaacaagcgtcagatcccacgttttcgaaatgat
ccccctggtccttcagtgaccacaaccacacaggagcttctacgttatgcagaatcgaac
cccgatgggcttcaatgcttggatgccataaatgatctacagttgaaggaaatggaagtg
gtcgagggctgcctgcgtggccggcacctagaggagactcttggcaccttcacctgcgtc
catagcccacgattctccccccagtatttgcggctgcaagagcggatgaagatcaaggat
gagctggagcagctgcggtacctgctgtcggaccagtccctcgccctgctgccagagtac
gagcagaggatcaacgtccttaaagccctcaactacattgaccagggtggcgcagtgcag
cttaagggccgtgtagcttgcgagatcagtagccatgagctcctcgtgaccgagatggtg
tttgagaacgtgctgtctgagctacgccctgaagagatcgtggccctgctctcctgtatg
gtctttcagcagaagacccatgtggaggcagaaattaatgaggtccttaagaagggcatt
gagcgcatacgtggtgtggcagagcgtgtggccatcctgcagcgcgagtgcggcatgcgg
gagtcggtggaggacttcgtggagcagtacaagtttgggctggtggaggtggtctacgag
tgggcccgaggactgccatttgctgaaattgccaaactaaccgatgtgcaggagggcatt
gtggtgcgttgcattcaacgtctggatgagacatgccgcgacgtgcgcaacgctgcccgc
atcattggtgatcccgtcctctatgccaagatggaggaggcctcaaacatgatcaagcgg
gacattgtgtttgctgccagtctgtacacccagtaa
DBGET
integrated database retrieval system
