Pleurodeles waltl (Iberian ribbed newt): 138299158
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Entry
138299158 CDS
T10800
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013
Nucleocytoplasmic transport
pwl03015
mRNA surveillance pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138299158
09122 Translation
03013 Nucleocytoplasmic transport
138299158
03015 mRNA surveillance pathway
138299158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138299158
03041 Spliceosome [BR:
pwl03041
]
138299158
Enzymes [BR:
pwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138299158
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138299158
Spliceosome [BR:
pwl03041
]
Complex C
Other components
EJC/TREX
138299158
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138299158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
138299158
NCBI-ProteinID:
XP_069093329
LinkDB
All DBs
Position
6:complement(46235558..46272585)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAGADTAEVPAKKEVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HIRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEDILKKNCPHIVVGTPGRILALA
RNKILNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNEVQDRFEVNISELPEEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgatgtggacaatgagctccttgactacgaggatgacgaggtggaaaac
caggcaggagcagatacagctgaggttcctgctaagaaggaggtgaagggctcctacgtc
tcaattcacagctctggtttccgggacttccttctgaagcccgagctactgcgtgccatc
gtggactgtggatttgagcacccatctgaagtccagcatgagtgcatcccccaagccatc
ctcgggatggatgtcctgtgccaggccaaatctggtatggggaaaacagcagtcttcgtg
ttggcaactctgcagcagctggagccggtgactggacaggtatcggtgcttgtaatgtgt
cacatccgtgaactggcctttcagatcagcaaggagtacgaacgattctcaaagtacatg
cccacagtgaaggttgcggttttctttggcggattatccatcaagaaggatgaagacatt
ctgaagaagaactgccctcacatcgtggtggggacccccgggcgcatcctggctctggcg
cggaacaagatcctgaacctcaaacacattaagcacttcatcctggacgagtgtgacaag
atgctggagcagctcgatatgcgcagagacgtccaggagatcttccgcatgaccccgcac
gagaagcaggtcatgatgttcagcgccacactgagcaaggagatccggcccgtgtgtcgc
aagttcatgcaagaccccatggaaatctttgtggacgacgagaccaagctaaccctgcac
gggctgcagcagtactacgtcaagctgaaggacaacgagaagaaccgcaagctctttgac
ctactggatgtgctggagttcaatcaggtggtgatcttcgttaagtctgttcagcgatgc
attgctctggcgcagttgttggtagagcagaacttccctgccatagccatccacagaggc
atgccacaggaggaaagattgtcccgttaccagcagtttaaggacttccagcgccggatc
ctggtggccaccaatctttttggcaggggaatggacattgagcgagtcaacattgccttc
aattatgacatgccagaagactctgacacgtatctgcatcgggtagccagagcagggcgc
tttggtacaaaaggcctcgccattacatttgtgtcagatgaaacagacgccaagatcctg
aacgaggtgcaggaccggtttgaggtgaacatcagcgagcttcctgaggaaatagacatc
tcctcgtacattgaacagacccggtaa
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