Pleurodeles waltl (Iberian ribbed newt): 138299263
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Entry
138299263 CDS
T10800
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03013
Nucleocytoplasmic transport
pwl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138299263 (CASC3)
03015 mRNA surveillance pathway
138299263 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pwl03019
]
138299263 (CASC3)
Messenger RNA biogenesis [BR:
pwl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138299263 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
138299263
NCBI-ProteinID:
XP_069093513
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All DBs
Position
6:complement(89941332..90294169)
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AA seq
688 aa
AA seq
DB search
MADRRRRRTRASQDSEEESGSDSTGSGPEREAGRPRPVVANVPAVPESIPAGIPLGEEES
ECESEDGIEGDAVLSDYESAGEESEGENEGEYSEEEEPAKVILKRENIATEEPASKEKDP
QEKIEKKDTIADERQSGDGQESTENDENKATKKSQKLDDDEDRKNPAYIPRKGLFFEHDL
RGQVQEEEVRPKGRPRKLWKDEGRWEHDRFREDEQAPKSRDELITMYGYDIRSTRNPDDI
RPQRMRKPRFETPKSRDQGWSEDKLERPPLRYPEDNHALPPQRTFNHRFSSGRIPPSRSF
PRTNSYKENRQHYRAFEDGHERPKPQSNYYRARSCDYQPNRELSPEPTVPQAERGSLDKT
EEITIESPSPTADTTEAPLPQDKPVEKKSYSRVRRTRVKGGEAGKPPEDPPPQEPLPPPP
VEVVTPPPAVKPESWEEAPVESNLNGLEQEMSQINVAGQSWTPGQPQYLQPRDLHGIPNH
MHIGGGPPQFNRMEEMGVQPSRAKRYSSQRQRPIPEPPPMHISIMERHYYDPYQGPIYTH
GETPAPLPPQSMIVQPEMHLPHPGLHPHQSAPPLANPGLYPPPVSLSPGQPPPQQLLPPP
YFSPPGVMNYGTPSYPYAPGALQGPPPPPPPHLYPNPQAQSQVYGGVTYYNTVHQQVQPK
LSPPRRTSHPVTIKPPPPEEALKDKNNT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcggataggcgtaggaggcggacgcgcgcttcacaggacagcgaggaagagtctggc
tctgacagcacaggctctgggccagaaagggaagcgggacgacctcggccggttgttgcc
aacgtccccgcggtaccggagagcatccctgcgggcatcccgctaggagaggaagagtct
gagtgtgaaagtgaagatggtattgagggagatgctgtcctatcagattatgaaagtgct
ggggaagaatctgaaggtgagaatgagggtgagtacagtgaagaagaagaacctgcgaag
gtcatcttgaaacgggagaacatcgccactgaagaacctgcatccaaagaaaaggacccg
caggagaaaatagagaagaaagacacaattgcagatgaaaggcaaagtggcgatgggcag
gagagtacagaaaatgatgagaataaggctaccaagaaatcccaaaagctggatgatgac
gaggatcgaaagaacccggcgtacattccccgcaaaggacttttctttgaacacgatctg
cgggggcaggttcaggaggaagaagtcagaccaaaagggcgtccgcgaaagctttggaaa
gatgagggacgctgggagcatgatagattccgtgaagatgagcaggctccaaagtccagg
gatgaactgataaccatgtatggctacgacatccgctccaccaggaatcctgatgacatc
cgaccacagaggatgcgcaaacccaggtttgaaactccaaagagccgggatcagggctgg
tctgaagacaagctagaacgacccccgctgcgttacccagaagataaccatgccttgcca
ccgcagcgtacttttaaccaccggttctcttcgggtaggatcccaccatcccggagcttt
cccaggaccaacagctataaagagaatcgtcaacattacagggcctttgaagatggacat
gagcgcccaaagcctcagagtaactactatagagctaggagctgtgattaccagcccaac
agggagctgtcccctgagcctactgtaccacaggcagaaaggggaagtctggataaaacc
gaagaaattacgatagaaagcccaagtcccactgctgatacaactgaggcaccattgcca
caggacaagcctgtggaaaagaaatcctattcacgagtacggaggaccagggttaaaggt
ggtgaggctggaaaacctccagaagatccacccccgcaggaaccactacctccaccacca
gtagaagtggtaacaccccctccagcagtgaagcctgagagctgggaggaggctccagtg
gaatctaacctcaatggacttgagcaagagatgagccaaattaatgtagcagggcagagt
tggacaccagggcagcctcagtacttgcagcccagagatcttcatggaataccaaaccat
atgcacattggtggcggacctcctcagttcaaccgcatggaggaaatgggggtacagcct
agccgtgcaaaacgatactcctctcagcgtcagcggcctattccagagccgcctcctatg
cacatcagcatcatggagcgccactactatgacccttaccaaggaccaatctacactcat
ggtgagaccccggctccgctgcctcctcagagcatgatcgttcagccagaaatgcacctc
cctcatccaggtttacacccacaccaatcagctccacctctggcaaatccaggtttatac
cctcctccagtatctctctcccctggacagcctcctcctcaacagctgctgccaccccct
tacttctctccaccaggtgtgatgaattatggaactccaagttacccctatgctcctggg
gcattgcagggaccaccaccaccacctccacctcatctatatcctaacccacaggcgcag
tctcaagtttatggtggtgtcacatactacaacactgtccatcagcaagtgcaacctaag
ctgtcccctcctcgcagaacctcccatcctgtcaccatcaagcctccacctcctgaggag
gctttgaaggacaaaaacaatacgtag
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