Pleurodeles waltl (Iberian ribbed newt): 138300279
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Entry
138300279 CDS
T10800
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
138300279 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138300279
NCBI-ProteinID:
XP_069095551
LinkDB
All DBs
Position
6:819373207..819532585
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AA seq
1530 aa
AA seq
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MDSLTRKSHRDDMDYNGRTFTETVTTTRLASLPPKGGAGGSSKLTSLTQGNSMDRKGHSS
SYVMSSSTTRGQTSTSMTGTGGRRAPSPSLHSPTFEKKSYRQAGYEGSSSGNSSPEYSRK
EYASSNTRGRTQSRESEIRVRLQSASPSGRWTELDDVKRLVKGNRSASISPTRSPSNTLP
IPKKASVETKMVTESSHSVSGTYDTTILDAALPPYMWTSTLPAGASMSSYHNNMMHGSSM
MNANAQSTGSVFGIPNNLAPSSPTLGSGLNTSSTVFGVQNNLTSGYVPISSSSAGTASTV
YGVQKNVPQSTGTISSSMSTSAVTTGHAQSDDILRKDYKFLLLEKENVPTKKDGELLIMS
KDSGKVFTAASTGFSGSASEDTMKKDKQYTTSTSDTSYKTEANGFTTVSTKDKATYAEIR
PADSSKTEAASGGWAGGGGGGGGGGKGSNSGGGCGAGCGGGTCCPWWMWLLGLLLGLMLL
GLLLGLLSLAEDVKDLKSRVATLEGASRSSASRQTALGSVSSSRGSETILSSDTISNTLQ
NSALGGEFDEQMQDRMWQYMKSKMMSDRERATFMGERGLPGPKGDMGMEGAKGDRGLPGA
PGPPGLIGHTGPEGPKGQKGSAGDPGVEGQMGQRGREGPTGPRGEPGPPGFGEKGDKGVG
GDPGLPGSVGNPGPIGPKGTMGASGPPGLPGSPGPQGFRGEAGLPGAKGEKGSMGVAGPK
GDQGEKGSRGLTGEAGLRGLPGPQGETGAKGSAGPPGPDGHPGPRGEPGLLGLPGPRGPP
GPAGDTGATGLPGPQGPPGPAGNPGRPGSKGDTGDPGRVIAAEGSSAVTIPGPPGPPGQP
GAQGLPGVSGPVGPAGLPGPPGVKGARGDPGETSVVYSAGSTSERAQQRPGPPGPPGPPG
PPGSPGIAGVSGAAGAAIQGPPGPPGVAGQPGEGRIGPPGAPGPVGPAGPPGPAGPTGPS
GPPGSFIPSSETFFAGPPGPPGQDGTKGDPGAPGVPGGPGLPGDPGQPGLPGSPGREGQA
IIGPVGPPGLPGPQGPQGERGEAGVPGAPGIPGGSRGPAGSGRGSPGTPGPPGPPGPPGP
PGRGTQEVQQYIAEYLQSKEKGDNIRSYLVGPQGPPGPPGDSGQSLDYAELASRVMTYIR
SSGLADGLPGPPGPPGPPGSYEEILSILQREEVRQYLMGPPGPPGPPGSLAVGTASLDYS
DLANRVVTYLSSSGVVSVSGPPGPPGPPGPPGLPGSAYGDITALLQTSEFRGIVGPPGPP
GLPGRQGLPGLPGPPGVPGFSQASFDKQDMVTYLESVGYVAGRQGPPGPPGPQGPPGNTG
GFVSYVENNQGDRFKTELIEYLTSDNIRSYISGPPGPPGPPGPQGPKGDSGLLSSSLSSM
SSSMSRSSSSSLSSSSSSSSLSEEYERLLSQVVDKIQSGGLIQDITYTVERSVGRPGPRG
QPGLPGPPGISKVYVTYGNETEVLMEFFRVNGTVQGPPGIPGQKGDRGYPGHKGDIGPRG
LQGPQGLQGPKGEKGEQFFVGRRKRRTSGV
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggacagtctaacaagaaaaagccatcgagatgatatggattacaacggacgaactttc
actgagactgtcactacaacaagacttgcatccttaccaccaaaaggaggagctggagga
agcagtaaactaacatctctaactcaagggaactcaatggacagaaaaggacacagcagt
agttatgtcatgtcatcgagcacaacaagaggccaaacgagtacctcaatgaccgggaca
ggtggcaggagggcaccatctccaagtctgcacagcccaacttttgaaaaaaagtcttac
cgccaggcaggatatgaaggaagttcaagtggaaattcctcccctgagtacagtagaaaa
gaatatgcatcttccaacaccagggggagaactcaaagcagagagagcgagattcgtgtc
cggctgcagagtgcatcaccgtcaggcagatggaccgaactagacgatgtgaaacgtttg
gtgaaggggaaccggtctgccagcatcagccccactcgatccccatcaaacaccctccca
atacccaaaaaagcatcagtggaaacaaagatggtgaccgagagctcccattcagtatca
ggaacatacgacacgaccatcctcgacgctgcccttccaccctacatgtggacgtccacg
ctgccggctggagcatccatgagcagctaccacaacaacatgatgcacgggtcatcgatg
atgaatgccaatgctcaatcaacaggatcagtgtttggaatccctaataacctggctccc
agtagccccaccttgggctctggtcttaacacctcttctacagtgtttggcgttcaaaac
aaccttacgtcgggatatgtcccaattagcagcagctcagcaggcacagcctccacagtg
tatggcgtacagaaaaacgttcctcagagcaccggtaccatcagcagcagcatgtctacc
tccgctgttacaacagggcatgcacagagcgatgacattctccgcaaggactacaagttc
ctactcctcgaaaaagagaacgtccccacaaagaaggacggggagctgctcatcatgtct
aaggacagcgggaaggtcttcactgcagccagcactggatttagcggatctgctagtgaa
gatacgatgaagaaagacaaacaatacacgacaagcacgtcagacacttcctacaaaaca
gaagcaaatgggtttacaacagtgtctacgaaagataaagcaacctatgcagagataaga
ccagcagacagctcgaaaacagaagcagcgtcaggaggatgggccggaggagggggcgga
ggagggggcggaggcaaaggaagtaacagtggcggtggctgtggtgctgggtgcggcggt
ggcacctgctgcccctggtggatgtggctcctgggtttgctgttggggttaatgctgctg
ggattgctgctgggactcctttccttagcggaggatgtgaaggacctgaagtcgcgcgtg
gctacattggaaggcgcgtcacgaagtagcgccagcagacaaacagcgcttggcagtgtg
tcttcgagtcgaggctcagaaacaatcctgtcctctgatacaatatcgaacacgctgcaa
aactcagccttgggtggagagtttgacgagcagatgcaggacaggatgtggcagtacatg
aagagcaaaatgatgtccgacagagagcgagccactttcatgggtgagagaggtttacct
gggccaaaaggtgatatgggtatggaaggagctaaaggtgaccgaggacttcctggtgct
ccagggcctccaggtctaataggccacaccggaccggaaggaccaaagggacagaaaggc
agcgctggtgaccctggtgttgaaggacaaatgggacagagggggcgtgaaggtcccact
ggacctcgtggagaaccagggcctccaggatttggagagaaaggagacaaaggtgttggc
ggagatcctggcctgccaggatctgtgggaaatccaggtccaattggtcctaaaggtaca
atgggagcctcaggcccaccaggtcttccaggttctcctggcccccagggattcagaggt
gaagcgggtcttccaggtgctaaaggtgaaaagggatccatgggagtcgctggcccgaaa
ggcgaccagggggagaaaggatctcgtggtctcacaggagaagcaggactgaggggattg
cctgggccgcaaggagagacaggagcgaagggatctgcaggtcctccaggcccagacgga
catccaggacccagaggtgaacctggacttcttggattacctggaccacggggcccacca
ggaccggcaggggatacaggggcaacaggtctaccaggaccccagggacccccaggaccc
gcaggcaatcctggacgccctggaagtaaaggtgataccggagacccaggcagggttatc
gctgcagagggatcatctgcagtcactattcctggtccaccaggacctcccggacaacca
ggagcccagggccttccaggtgtttcaggtcccgttgggccagctggactcccaggacca
ccaggtgttaaaggagcccgtggtgatcctggagaaacatcagtcgtctacagtgcaggt
tcaacctcagaacgtgcacaacaacgtccaggccctcctggaccaccaggacccccagga
cctccaggatcacctggcattgcaggagtatcaggggcagcaggtgctgctattcaagga
ccacctggaccacccggtgttgctggtcagccaggggaaggtagaattggaccgccagga
gcgccaggacctgttggacctgctggaccacctggacctgctggtccgactggaccttct
ggacctcctggttcctttatcccatcatcagagaccttctttgcaggaccaccaggtccc
ccaggtcaagacggaaccaaaggagacccaggtgcacccggtgtaccaggcggaccagga
ttgccaggtgaccctggacagcccggcctcccaggatctccagggcgcgaaggtcaagca
atcatcggacccgtgggacctccaggtctgcctgggccacagggaccacaaggagaacga
ggagaagccggtgttccaggggctccaggaattccaggaggatctcgaggtccagctggc
agtggaagaggaagtccaggaactccagggccccctggccctcctggtcctccaggcccc
ccaggccgcggcactcaagaagtccaacaatacattgcagagtatcttcagagtaaggaa
aaaggcgacaatatcagaagttaccttgtcggcccacaaggacctccaggacccccagga
gacagcgggcaatctctggattatgccgagctggctagccgtgttatgacctacataaga
agttccgggttagctgatggtttgccaggtcctccaggccctccaggaccccctggttcc
tatgaagagatcctttcaatattacaaagagaagaagtgcgtcagtacctaatgggacct
ccagggccacctggacctccgggatctcttgctgttggaaccgcgtctctggactattca
gacctagctaatcgagttgtaacctacttgagcagttctggagttgttagtgtttccggt
cctcctggtcctcctggtcctcctggacctcccggtttacctggatctgcctacggagac
atcacagctttattacaaacatctgaatttagaggcattgttggaccaccagggccacca
ggactgcctggacgtcaaggattacctggactgcccggccctccaggagttccaggcttc
tctcaagccagcttcgacaagcaggacatggtcacctacctcgaaagtgtggggtacgtg
gcaggaaggcaagggccacctggaccccctggacctcaaggacctccgggcaacacaggc
ggctttgtttcatatgttgaaaacaaccagggggatcgattcaagaccgagctgattgaa
tatctaacaagtgacaacattcgaagttacatctcaggaccacctggtcctcctggcccg
cctggaccacaaggacccaaaggcgatagcggtcttttgtcttcttcgctatcttctatg
tcatcctctatgtcgaggtcatcatcatcctcactgtcatcttcatcatcttcctcgtct
ctatcagaagaatatgaaagactgttgtctcaggtcgtggataagattcagagtggtggg
ctgatacaagacattacctacactgttgagcgatctgtaggcagaccaggtcccagggga
caacctggcctacctggccctcctgggataagcaaagtatatgtaacatatggaaacgag
acagaagttctaatggaattcttcagagttaatggtacagttcaaggacctcctggaatt
ccaggtcaaaaaggggatcggggataccctggtcataaaggtgacattggaccacgtgga
ctgcaaggaccacagggactacagggaccaaaaggagagaagggtgaacaatttttcgtg
ggaagacggaaaagaagaacatcaggtgtttga
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integrated database retrieval system
