Pleurodeles waltl (Iberian ribbed newt): 138300520
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Entry
138300520 CDS
T10800
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03022
Basal transcription factors
pwl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
138300520
09124 Replication and repair
03420 Nucleotide excision repair
138300520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pwl03021
]
138300520
03400 DNA repair and recombination proteins [BR:
pwl03400
]
138300520
Transcription machinery [BR:
pwl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
138300520
DNA repair and recombination proteins [BR:
pwl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
138300520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
Motif
Other DBs
NCBI-GeneID:
138300520
NCBI-ProteinID:
XP_069096130
LinkDB
All DBs
Position
1_1:677519183..677521402
Genome browser
AA seq
556 aa
AA seq
DB search
MVLHRPAIIATSSKEVLLIVKKVRQKKQDGALYLMAERVAWAPEGKDRFTVSHMYADIKC
RKISPEGKAKIQLQLVLHAGDSTNFHFSNESTAMKERDAIKDLLQQLLPNFKRKANKELE
EKNRMLKEDQVLFQLYKDLVVSQVISAEEFWANRLSLNSLDNSAATCNKQDAGISAVFLA
DVRPQTDGCNDLRYNLTLDIIESIFRTYTAVKLKYAENIPHNLIEKEFWTRFFQSHYFHR
DQLNMGSKDLFAECAKLDDKGLKTMVSQGVKNPLLDLTSLEDKSLDEGYGISSVPSTSNT
KSLKENSNAAIIKRFNHHSAMVLAAGLRREDAQNNQCSETSSTDGNSKESDFFQPPVKKV
KLQESIEYEDLGQKNNTKTIALNLKKSDRYFHGPTPIQSQRYAXSQDMINSFSSIKQEME
DYFPKLTQVLSSGAASSTISALSPGGALMQGATQQAINQMVPNDIQSELKHLYVAVGELL
RHFWSCFPVNTPFLEEKVIKMKTNLERFQITKLCPFQEKIRRQYLSTNLTSHLEEMLQTA
YNKFQLWQSKRMLKKT
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggtccttcaccgtcctgccatcattgcaacatcatccaaagaagtgttactaattgta
aagaaggttcgtcagaaaaaacaggacggagctctttacctcatggcagaaagagtggcc
tgggcgcctgaggggaaagataggttcactgttagtcatatgtatgcggacattaaatgt
cggaaaataagcccagaaggcaaagctaagatccaacttcagcttgtcctgcatgcagga
gattctacaaacttccatttttctaatgagagtactgcaatgaaggaaagggatgcaata
aaggatcttctccagcagctgcttcctaacttcaagagaaaggctaacaaagagcttgaa
gaaaagaacaggatgctcaaagaagatcaagttttgttccagctttataaagatcttgtt
gtcagtcaggtgatcagtgcagaggaattctgggcaaatcgtttatccttaaactccctg
gataactctgctgccacttgcaataagcaagatgccggcatatcagccgtgtttctggct
gatgtgcgtccccaaactgatggctgtaatgatcttagatataacttgacattggatata
attgaatcaatcttcagaacttatacagcagtgaaactgaaatatgcagaaaatatacca
cacaacttgatagagaaagagttttggacacgattcttccaatcccattattttcacagg
gatcaattaaacatgggttcaaaagatctttttgctgagtgtgccaaattagatgacaaa
ggtttgaagaccatggtatcacaaggtgtgaaaaatcctttgctagatttaacttcttta
gaggacaagtcattggacgagggttatggcatttcctctgtaccatctacatcaaataca
aaatcgttaaaggagaacagcaatgctgccataattaaacgctttaatcatcacagtgcc
atggttctcgctgctggtcttagaagagaggatgcccaaaacaatcaatgcagtgagacc
agcagtacagatggcaactctaaggagtcagacttctttcaaccaccagtaaagaaggtg
aagttgcaagaatccatagagtatgaagatcttgggcagaaaaataacacaaagacaatt
gcactgaatttaaaaaagtcagacaggtatttccatggaccaacaccaattcagtctcag
agatatgcanaaagtcaggatatgattaattcttttagtagtattaaacaagaaatggaa
gactatttccctaaattaactcaggttctctcaagtggtgctgctagcagtactatatca
gccctgtcacctggaggagccttaatgcagggtgcaacacaacaagccataaaccagatg
gtgccaaatgacattcagtctgaactgaaacatctgtatgtagcagtgggagagttgctt
cggcacttctggtcctgttttccagttaatactccattcctagaagaaaaggttattaaa
atgaagaccaacttggaaagatttcaaattaccaaactttgcccattccaagagaaaata
cgaaggcagtatttaagcacaaatttgacaagtcatttagaagaaatgctgcagacagcc
tacaacaaattccagttgtggcaatctaaacgtatgctgaaaaaaacgtga
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