Pleurodeles waltl (Iberian ribbed newt): 138301169
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Entry
138301169 CDS
T10800
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138301169 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138301169 (PRPF4)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
138301169 (PRPF4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_like
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
138301169
NCBI-ProteinID:
XP_069097465
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Position
6:complement(1583858313..1583946698)
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AA seq
507 aa
AA seq
DB search
MSDDEDGPPLVKRSRIFYGSLAEKERDRIAKGENLLLGKAAVKAGIEAGNINFASGESFD
LEEHRSERQAEILAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLR
NILSVVGADALKKTKKDEEKSKKSKEYQQTWYHEGPASLKTARLWIASYSLPRAVKRLEE
ARNFKELPEATRSSLKAEQHKSLRSLSNFCSQIGDDRPISYCNFSPNSKLLATSCWSGLC
KLWSVPDCSLLKTLRGHTTNVGAIVFHPKATISLETKDVNLASCAADGSVKLWNLESDEP
VADIEGHTMRVARVTWHPSGRFLGTTCYDHSWRLWDLDAQEEILHQEGHSKGVYDIAFHP
DGSLVGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYAIAFSPNGYHVATGSGDHTCKVWD
LRQRKCIYTIPAHHNLITGVKFEPTNGNYLATAAYDNTAKIWCHPGWSPMKTLAGHVGKV
MGLDISADGQLIATCSYDRTFKLWVAE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgatgaagatggtcccccactggtgaagaggtcccgtattttttatggaagt
ttggcagagaaggagcgggaccggatcgccaaaggagagaacttgctgttgggaaaagca
gcagtaaaagcaggcatagaagctgggaatatcaatttcgccagtggtgagtcttttgat
cttgaggagcatcggagtgagcgccaagcagagatccttgctgagtttgagcgcaggaaa
cgtgcacggcaaattaatgtttccacggatgattctgaggtgaaggcgtgcctgcgtgct
ctaggggagccaatcacactctttggtgaggggccggcagaaagaagagagagattgcga
aatattctttctgtggtcggtgctgatgctttaaagaagaccaaaaaagatgaggaaaag
tccaagaaatctaaggagtatcagcaaacttggtatcatgaagggcctgcttctcttaag
actgccaggctttggattgcaagctattcgcttccacgggcagtaaaacgcttagaagaa
gcccgaaactttaaggagcttccagaagcaacaaggtcatcactcaaggcagaacagcac
aagtccctacggtctttgagtaacttctgtagtcagattggggatgaccgaccaatatct
tattgcaactttagtcccaactccaagcttttagcgacctcctgctggagtggactttgt
aagctgtggtctgtgcccgattgcagccttcttaagacactgagaggtcacaccacaaac
gttggcgcgattgtgttccatccaaaagccactatttccttggaaacgaaggatgtgaat
ttggcatcgtgtgcagctgatggctctgtcaaactctggaacttggagagtgatgaaccc
gttgcagatattgaaggtcacacaatgagagtggcacgagtgacatggcatccttctgga
agattccttggcaccacatgctatgatcactcgtggcgtctgtgggaccttgatgctcag
gaggaaatcttacaccaggaaggacacagcaagggagtttacgatatcgcctttcaccct
gatggctcactggtgggaacaggaggtctggatgccttcggtagagtctgggacctccga
actggccggtgcatcatgttcttggaagggcatctaaaggaaatatatgccattgcgttt
tcccccaatggatatcatgtggcaacgggcagtggcgaccacacatgtaaagtctgggat
ctgcggcagaggaagtgcatatacaccatccctgcccaccataatctgatcactggtgtt
aagtttgaacctaccaatggcaactacctggcaacagcagcctacgataatactgcaaag
atctggtgccacccgggctggtccccgatgaaaacactggccggacacgtggggaaagta
atggggctagatatctctgcagatgggcagttgatcgctacgtgctcatatgacaggacc
ttcaagctctgggtggcagaatag
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integrated database retrieval system
