Pleurodeles waltl (Iberian ribbed newt): 138301246
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Entry
138301246 CDS
T10800
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138301246 (TNC)
04518 Integrin signaling
138301246 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138301246 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pwl00536
]
138301246 (TNC)
Glycosaminoglycan binding proteins [BR:
pwl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138301246 (TNC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_PBP1
Fn3_VIN3
Fn3_Dep-1_2nd
Pur_ac_phosph_N
hEGF
EGF
NDNF
EGF_PEAR1L
DUF7949
fn3_2
TauD
Motif
Other DBs
NCBI-GeneID:
138301246
NCBI-ProteinID:
XP_069097617
LinkDB
All DBs
Position
6:complement(1616158184..1616285573)
Genome browser
AA seq
1809 aa
AA seq
DB search
MEAMGRCSRVLAILMLTLLCHHSDGGLIKKIIRQKRESGLISNVSLPEDNQPVVFNHVYN
INLPMGSLCSVDLDPVSGGAGQKPLSEQGSQQEEHSVDGNNQIVFTHRINIPRRACGCAA
APDIKDLLSRLEELEGLVSSLREQCTSGAGCCGGSLTAEGAVDTKPYCSGQGNYSTETCS
CICEAGWTGPNCSESECPGHCNNRGKCVNGKCICDEGFTGVDCNELTCPDDCNDQGRCVN
GICICFEGYGGEDCSQEICPVECSEFGKCVNGQCVCDDGFTGEDCSEPRCPNNCNNRGRC
VEDECVCDEGFTGDDCSELICPNDCFDRGRCVNGVCFCDEGFTGEDCGELTCPNNCNNRG
RCVNGLCICDDGFQGDDCSELRCPSDCNDRGRCVNGKCVCNEGFMGEDCAELSCPNDCNN
RGRCVNGQCVCDEGFMGEDCGELRCPGDCNNRGRCVNGQCVCDDGFRGEDCGELKCPDDC
NNRGVCVNGQCVCDEGFMGENCGELRCPNDCKNRGRCVNGQCICDDGFKGEDCSELRCPD
DCNDRGRCVNGQCVCDEGFTGENCDSLACLNNCNDRGLCVNGQCVCEEGFLGEDCSKVSP
PKDLTVTEVTTQSVNLEWVNEMKVTEYLISYIPTSPGGLELDFRVPGDQTTATIQELEPG
VEYFVRVFAILKNHRSIPVSARVATHLPTTDDLRFKSVKETSVEVEWDPLDISFDTWDLI
IRNTKEENGEISTSVQRPVTSYVQTGLAPGETYNFSIHVVKNNTRGPGLAKVTTTRLDAP
SQVEVRDVTDSTALVTWFRPLAQIDGVILSYGTGSEPPTVVELSEDESQYSLGNLIPDTE
YEVTLLSRRGLMTSDPVTETFTTDLDAPKNLRRVSQTDTTITLEWKNSQANVDLYRIKFA
PLSGGDHAEITVPKSNQATTKVTLTDLKPGTEYGIGVTAVKQDRESGPATINAATDLDAP
KDLQVSGSTESTLSLRWKRPLAKFERYLISYISNSGKKNEIEVPGNVNSFILTGLDAGTE
YSITIVAEKGKHKSKPASVIGSTAREPELGSLQVPDVSWDSLRLAWSVADGAYEMFVIQV
QDADRKEEPVTITVAGNTRSLEVPGLKSATPYEITLYGLLRGYKTKPLYTEVTTAEEPEV
EDLTVTHVTPQSFDLSWSATDGAFDNFVVEVIDSNRLLEPTVFNVTGASRTTSISGLLPS
TDYVVYLYGIVHGLRTQAISATVTTDAEHEVDNLLVSDTTPEGFRLSWTADGGVFDSFIL
KIRDSKQRFDPLELEVPGQDRSTAVTGLRDGTEYEIELYGVASGQRSEPINTIATTAVGA
PKGLSFSDITENSATVSWTAPQTRVDTFKITYVPTSGGVPKTVTVDGTKTQTTLVTLTPG
VQYIVTVVSVKALDESGPISGPLTTALDSPSGLKAVNITETEAIALWQPSIASVDSYVLS
YAADNDPETTKTISGNNVESDITGLQPSTQYTLTIYAIRGPQKSATLSTKFTTALDAPRD
LAASEIQSETALLTWRPPRSIITGFILMYDSVDGTLKEVILGPDMTSYNLVDLSPSTQYT
VRLLSMNGDVRSKTIQTVFTTTGLLYPFPKDCSQALLNGETASGLYTIYLNGDKTKPQEV
YCDMSEDGGGWIVFLRRVDGKEDFYRNWKAYAAGFGDPTKEFFLGLENLHQITSQGQYEL
RVDLRDGDETAYAVYDKFLVGDSKTRYRLKVDGYSGNAGDSMTYHNGRSFSTFDKDNDSA
ITNCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKVRPVSFR
NLEGRRRRA
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatggggcgctgctctcgggtcctagccatcctcatgctcactctgctgtgc
caccactcagatggtgggctcattaaaaagatcatccgccagaagcgagagagcgggttg
atttcaaacgtctcgctgccagaggacaaccagcctgttgtgtttaatcatgtctacaac
attaacttgcccatggggtccttgtgctctgtggatttggacccagtgtctgggggcgca
ggtcagaagcccctatcggagcaagggagccaacaagaggaacactcagtggatggcaat
aaccagatagtctttacacaccgtatcaacatcccgcggcgggcctgcggctgtgcggct
gctcctgatatcaaggacctcctcagccgactagaggagctagaggggctggtgtcctct
ctacgggagcagtgtaccagtggtgctggttgctgtggcggtagcttgactgctgaaggt
gcagtggatacaaagccttattgcagcgggcaaggaaattacagcactgagacctgcagc
tgcatctgtgaggctggctggacaggacccaactgttcagagtcagagtgcccgggccac
tgcaacaacagaggcaaatgtgtaaatggtaaatgtatctgtgatgaaggcttcactggt
gtggactgcaatgaactcacttgccctgatgactgcaatgatcaaggaaggtgcgtcaat
ggcatctgcatatgcttcgaagggtatggaggagaggactgcagccaggagatctgccca
gttgagtgcagtgagtttggaaagtgtgtgaacgggcaatgtgtgtgtgatgatggtttc
actggcgaagactgcagtgagccacgctgccccaacaactgcaacaaccgtggccgttgt
gtggaagatgaatgcgtctgcgatgaaggattcacaggagatgactgcagcgaactgatc
tgtcccaatgactgcttcgaccgaggccgttgtgtcaatggtgtatgcttctgtgatgag
ggcttcacaggggaggactgtggggaattgacatgccccaacaattgcaataatcgtggt
cgctgtgtgaatggactttgtatctgtgatgatggcttccaaggagatgactgcagtgaa
ttgcgatgccccagtgactgcaatgaccgtggccgatgtgtcaatggaaaatgtgtgtgc
aacgaaggattcatgggtgaagactgtgctgaattgagttgtcccaatgactgcaacaac
cgcggtcgatgtgtcaacggccaatgcgtgtgtgacgaaggcttcatgggtgaagactgt
ggcgagttaaggtgccctggtgactgtaacaaccgtggtcgatgcgttaatggccagtgc
gtgtgtgatgatggcttccgaggtgaagattgtggtgagctcaaatgcccagatgactgc
aacaaccgtggtgtctgtgttaatggtcaatgtgtgtgtgatgaaggcttcatgggagaa
aactgtggtgaactacggtgtccaaacgactgcaagaaccgtggccggtgtgtcaatgga
cagtgcatttgtgatgacggcttcaaaggtgaagactgcagtgagctccggtgccctgat
gactgtaatgatcgtggccgctgtgtcaatggacaatgtgtttgcgatgaaggcttcact
ggagagaactgtgattccttggcctgcttgaacaactgcaacgatcgaggcctttgtgtc
aatggccaatgcgtctgtgaagaaggcttcctgggtgaagactgctctaaagtgtcccct
ccaaaggacctgacagtgacagaagtgacaacacagtctgtaaatctggagtgggtgaat
gaaatgaaagtcacagagtaccttatctcctacatcccgaccagcccaggtggccttgaa
ctggacttcagggtgccaggagaccagaccactgccaccatccaagaactcgagcctggt
gtggaatattttgtacgggtcttcgccatcctaaagaatcacagaagtattccagtcagt
gcccgagttgcaactcatctgccaacaactgatgatctgaggttcaaatcagtcaaagag
acatctgtggaggtggagtgggaccccttggacatctcctttgacacttgggatctcatt
attcgtaacacaaaagaagagaatggagagataagcacaagcgtgcaaaggcctgtgaca
tcgtatgtgcaaacaggcttagcaccaggagagacctacaacttctccatccatgttgta
aagaacaacacccgaggacctggacttgccaaagtgacaactacacggctggatgcccca
agtcaagtggaggtgcgagacgtgaccgactcgacggctttggtcacgtggtttagacct
ctggcacaaattgatggtgttatcctatcctatgggacaggaagtgagccacccaccgtt
gtggagctctctgaagatgaaagtcagtactctttgggaaatctgatcccagataccgag
tatgaggtgacattgctttcacggcgcgggctaatgacaagtgacccagtgacagagacc
tttactacagatttggatgctccgaagaatctgaggcgggtatcccagactgacactacc
atcaccttggagtggaagaacagtcaagccaatgttgatctttacaggatcaaatttgcc
cctctctcaggtggagatcatgctgagataaccgtgccaaaaagtaaccaggccacaacc
aaagtcaccctcacagatctgaagccaggaactgagtatggcattggagtcacagctgtg
aaacaggaccgagagagcggcccagctactatcaatgctgcaacagacctagatgctcca
aaagacctgcaagtcagcggctctacggaaagcactctttcactccgctggaaacggcca
ctggccaaatttgaacgctacctcatcagttacatttctaatagtggaaagaaaaatgaa
attgaagtgcctggaaacgtcaactcttttattctgactggtctggatgctggcacagaa
tacagtatcaccattgtagcggagaagggcaaacacaagagcaaaccagcttcagtgatt
ggctctacggcaagggaacctgagctgggcagtttacaggtgcccgatgtgagctgggat
tccttgagactcgcgtggagtgtggccgatggggcctatgagatgtttgtcattcaggtg
caggatgcggaccgcaaggaggagcctgtgactatcacggttgcaggaaacacacgttct
ctggaggtgccaggtctaaagtccgccacaccttacgaaattaccttgtatgggttgctt
cggggctacaagactaagcctctttacacggaggtcaccacagcagaagaaccggaggtg
gaagatctaacagttacccatgtaaccccccaaagctttgacttgtcctggtcggccaca
gatggagccttcgacaactttgtcgtagaagtgattgattctaacaggttactcgagccc
accgtgttcaatgtcacaggtgcctcacggacgacgtctatctcagggctcttaccaagc
actgattacgttgtctacctctatgggattgtacatggcctccgcacacaggccataagt
gctaccgttactacagacgcggaacatgaagtcgacaaccttctagtttctgataccact
ccagaaggtttccgtctgtcctggactgcggatggtggggtctttgacagcttcatccta
aaaatcagggacagcaagcaaaggtttgatcccctggagctggaggtccctgggcaggat
cgttccaccgccgtcacgggcttgcgcgatggcacagagtatgagattgaactctatgga
gttgcaagcggacaacgatctgagccgataaatactatagctaccacagctgttggagct
ccaaaaggactttccttttctgatatcacagaaaactcagccactgtcagctggactgcc
ccacagacacgagttgataccttcaagatcacctatgttccaactagcggaggtgttcca
aagactgtgacggtggatggaaccaagacacaaaccactctagtgacacttactccaggt
gttcagtatattgtcactgttgtttcggtaaaagcacttgacgaaagtgggccaatctca
ggacccctgacaacagctctggacagtccatccggcctgaaagctgtgaacatcacagag
actgaagccatagccctttggcaaccatccattgcatcagtcgatagctatgttctttcg
tatgctgctgataacgatccagaaacaactaagaccatctctggtaacaatgttgaaagt
gacattactggtctccagccttcaacacaatatacattgacaatctatgctatcagagga
ccacagaagagtgcaacactgtctaccaaattcactacagctcttgatgcacctcgagac
cttgctgcaagcgaaattcagtctgaaacagcactgctgacttggagacccccacgctct
attatcactgggttcatcttaatgtacgactctgtggatggaaccctcaaggaagtcatc
ctgggacccgacatgacgtcctacaatctggtagatctcagcccatccactcagtacact
gtgaggctgctgtcaatgaatggtgatgtgagaagcaagaccatccaaacagtcttcacc
acaactggactcctctatccattccccaaggactgttcacaagccttactgaatggagaa
acagcatctggcctgtacaccatctatctgaatggagacaagactaagccgcaggaggtg
tactgtgacatgtctgaagatggtggaggatggattgtgtttttgagacgtgttgatgga
aaggaagacttttacaggaattggaaggcctatgccgcagggtttggagaccccactaag
gagtttttcttgggtctggaaaatcttcatcaaatcacatcccagggacagtatgagctg
cgtgtagatctgagagatggcgatgagacagcatatgcagtgtatgacaagttccttgtt
ggcgattccaagactcgctacagactcaaagtggatggatatagtggaaatgcaggtgac
tccatgacctaccacaatgggcgctctttctccacatttgataaggacaacgattctgcc
attaccaattgcgctttgtcatacaagggagccttctggtacaaaaactgtcacagagtc
aatttgatgggcagatatggtgacaacagccatagtcagggtgttaactggttccattgg
aaaggacatgaatattccattcaatttgctgaaatgaaggtgagacctgtcagtttccgg
aatttggaaggcagaagaaggcgagcataa
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integrated database retrieval system
