Pleurodeles waltl (Iberian ribbed newt): 138301585
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Entry
138301585 CDS
T10800
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pwl04515
]
138301585 (PCDH18)
Cell adhesion molecules [BR:
pwl04515
]
Cadherins
Protocadherins
138301585 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
TMEM154
Syndecan
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
138301585
NCBI-ProteinID:
XP_069098206
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All DBs
Position
1_2:526154080..526168604
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AA seq
1147 aa
AA seq
DB search
MLWKKMGERSLYRGLLPLVCLLLLLLRGSGATNLKYRIYEEQRQGTVVARLSEDVAALLA
QLPDPSAVRFRAMQRGGPQLLRVRDDTGELSVAGRIDREQLCQRDANCSLQFDVITLPTE
YLRILHVELEVLDINDNAPQFPRPLIALEISESAAAGTRIPLDAATDADVGDNALQGYAL
SGADCFGIEVRSRTDGAKYAELVLLKELDREKQAGYELQLTASDLGVPQRQGTAVIKITV
SDANDNSPAFERPSYTLQLPESSAPGALLIDLNATDPDEGANGKIVYAFSSHVSPQILET
FKVDPETGHLTLLKQVDYEATKSYEIDVQAQDMGPNPIPAHCKVIINVVDINDNKPEVSI
NLMAVGKEDVTYISEAAPLETFVALVRVQDKDSGLNGEVVCKLHGHGHFKLQKSYENNYV
ISTNASLDREKRSEYSLTVIAEDRGIPSLSTVKHFTVQLNDVNDNPPRFQTNRYEIVVAE
NNSPGAYITSVMATDPDRGDNGLVTYTILDSYILGSSITTYVTIDPSNGAIYALRTFDHE
DVNQVAFVVQARDGGEPQLSTNATVVLTILDENDNPPIIVSPALRNNTAEIAIPKDAESG
FLVTKIRANDRDSGMNSELSCSITAGNEDNIFIMDPKSCDIYMNISMESFPYTEWELFVT
VHDKGSPQLSAKAVLKCFAFEPSYTASSTEATHTRKASLDVSMIIIISLGAICAVLLVIM
VIFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTLNGTLPIRSHHRS
SPSSSPTLERGQMSSRQSQHSRQSLNSLVTISSNHVPENFSLELTHATPVVEVRPSVSQL
LAMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDMGRDSPID
RLLGEGFSDLFLAEGHRIPTAMRLCTDECRVLGHSDQCWMPPLPSPTSDYRCNLFIPGEE
LQSPQQPQEEPQEPQQKPQLDDEVHTVDTNEKKKSFSTFGKDSEDEEAADVCSSSLLSEM
NSVFQRLLPPSMDAYTECNEVDCSNSLERKKGPLAAKTVSYPQGVAAWAANSYFPCPTNN
NVPPLGIHSGVQPSSKWLPAMEEIPENYEEDDFDNMLNHFGEGKHELMDATELVAEINKL
LQDVRQS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgctttggaagaagatgggtgagcgcagcctctaccggggactcctgcccctcgtgtgc
ctcctgctgctcctgctccgaggatccggggccaccaaccttaagtaccgcatctacgag
gagcagcggcagggcacggtggtggcgcgtctctcggaggacgtggccgctctgctggcc
cagctcccggacccctcggccgtgcgcttccgcgccatgcagcgcggtgggccacagctg
ctgagggtgcgcgacgataccggcgaactgagcgtggccgggcgcatcgaccgtgagcag
ctgtgccagcgcgatgccaactgctcgctgcagtttgatgtgatcaccttgcccactgag
tacctgcgcatactgcacgtggagctggaagtgctagacatcaacgacaacgcgccgcaa
ttcccgcgccccctgatcgccctggagatctcggagagcgccgccgccggcacccgcatc
ccactggacgccgccaccgacgccgatgtgggtgacaacgcgctgcagggctacgcgctc
tccggcgcagactgctttggcatcgaagtgcgttcccgcaccgacggcgccaagtacgcc
gagctggtgctgctgaaggagctggaccgagagaagcaggcaggctacgagctgcagttg
accgcctcagacctgggggtgccccagaggcagggcaccgctgtcatcaagatcaccgtg
tctgatgccaacgacaacagtccggcttttgagaggccttcctacaccctgcagctgccc
gagagttctgcgccgggcgccctgctcatcgacctgaacgccacagaccccgatgaaggt
gcaaacgggaagattgtctacgctttcagcagccacgtgtcaccacagatcctggagacc
ttcaaggtggatccggagacgggccacctgaccctgctcaagcaggtggactacgaggcc
accaagtcctacgagatcgacgtccaggcccaagacatgggccccaatcctatccctgcg
cactgcaaggtaatcatcaacgtggtggacatcaacgacaacaaaccggaagtgagcatc
aacctgatggccgttggcaaagaagatgtgacctacatctccgaagcggcgcctttggaa
acctttgtggccttggtcagggtgcaggacaaggactccggcctgaatggtgaagtggtt
tgcaaactacatggacacgggcacttcaaactccaaaagagctacgagaataactacgtc
atttccaccaatgcctcactggacagagagaagcggtcggagtacagtctgactgtaata
gccgaggacaggggcattccaagcctttccactgtcaagcacttcactgtccaacttaat
gatgtcaatgacaacccaccccgcttccagacaaaccgatacgaaattgtggtggcggag
aacaactctcccggagcctacattacatcggttatggccaccgacccagaccgaggagac
aatggtctggtgacctatactattctggacagctacattttagggagctccatcaccacc
tatgtgactattgatccatccaatggggccatctatgcccttaggacgtttgatcatgaa
gatgtgaaccaggtggccttcgtagttcaggccagagatggaggcgagccacagctttct
accaatgccacagtggttctcaccattcttgatgagaacgacaacccacctattatagtg
agccctgcactgaggaacaacactgcagaaatcgcgatccctaaagatgctgaaagtggg
ttccttgttaccaagataagggccaatgacagagactctggcatgaattctgaacttagt
tgttcaatcacagcaggcaacgaggacaatatcttcataatggacccaaagtcatgtgat
atttacatgaatataagcatggagtcctttccttacacagaatgggaactgtttgtgact
gttcatgataaaggaagtcctcaattgagtgccaaagctgtccttaaatgcttcgccttc
gaaccttcctacactgcttccagcactgaagccacccacacaaggaaagcctctctggat
gtctccatgataataataatttctctgggagccatttgtgcagtccttttggtcatcatg
gtcatctttgccactagatgcaacagagaaaaaaaggacaccagatcttacaactgtcgt
gtggcagaatcaacctaccagcaccaccctaagaggccatcacgacagatccacaagggg
gacattacgctggtgcccacactgaacggcaccttgcccatcagatctcaccacaggtca
tctccatcatcatcgccaactttagaaagagggcaaatgagcagcaggcaaagtcagcac
agccggcagtccctaaacagcctggtgaccatctcctcaaaccatgtgcctgagaacttc
tcattggaactcacccatgccacacccgtcgttgaggtaagaccatctgtctcacagctc
cttgccatgcttcaccaaggccagtatcagccaagacccagtttcagaggaaataaatat
tcccggagttatagatatgccctccaagatatggataagtttagcctcaaagatagcggc
cggggcgacagtgaagcaggggacagtgattatgatatgggcagagattctccgatagac
cgtcttctgggtgaaggattcagtgatcttttccttgcagaaggccacagaattcctaca
gcaatgagactctgcacagatgaatgccgtgttctgggacactcggaccagtgctggatg
cctccattgccatctccaacctctgactatagatgcaacctcttcattcctggagaggag
ctccagtccccgcagcagccgcaagaggaaccgcaggagccacagcagaaaccacagctc
gatgacgaggtgcataccgtcgacaccaacgagaagaagaagagcttctcaacctttggg
aaagactctgaggacgaggaggcggctgatgtttgttcttcctccctcctttcagaaatg
aatagtgtcttccagcgccttttaccaccatccatggacgcgtacaccgaatgtaatgaa
gtggattgttccaattctttggagcgcaagaaagggcccctggcggccaagactgtaagt
tacccccaaggggtggcagcgtgggcagcaaactcttattttccgtgccccacaaacaat
aacgtgccgcccctggggatacattcaggtgtacaaccgtcttcaaaatggctgccagcc
atggaggagatcccagagaactatgaagaagatgactttgacaatatgctcaaccacttt
ggtgagggcaaacacgaactcatggacgcgaccgagctggttgcggaaattaacaagttg
ttacaagatgtaagacagagctag
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