Pleurodeles waltl (Iberian ribbed newt): 138301710
Help
Entry
138301710 CDS
T10800
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pwl03009
]
138301710 (PDCD11)
Ribosome biogenesis [BR:
pwl03009
]
Eukaryotic type
90S particles
Other 90S particles
138301710 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Suf
HAT_Syf1_CNRKL1_C
TPR_14
OB_RRP5
OB_RRP5_4th
TPR_19
TPR_2
TPR_6
TPR_15
TPR_CcmH_CycH
ARM_TT21
ARM_TT21_5th
ARM_TT21_N
TPR_12
TPR_16
ANAPC3
HAT_Syf1_M
DUF7017
TPR_10
MMR1
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
138301710
NCBI-ProteinID:
XP_069098326
LinkDB
All DBs
Position
6:complement(823888545..824234498)
Genome browser
AA seq
1558 aa
AA seq
DB search
MPTKCFRVSVHVDVFGCPDASFINSPNSSSLRNNQSKNRNFWSMELFEESFPRGGAQKKP
KETETNKRPVDRDNLFNTHDEEDTAAKRKRGKGDSAKSDQLKSKKPKTERTEFSTSKHEK
CIEILKFNNLSTGLLLLGCVKEATDFELIVSLPHGLTGFVQVTNICEAYTKLLSKQVETE
ELSVDLAPLSELFTPGMLVRCSVSSLETTKGGFHSLKLSLNPKDVNKALSPGTLMPGMLL
SGCVSSVEDHGYLIDIGVGGNKAFLPRQKAQNYIKQSNKGSELKIGQYLNCLIEEVKDHG
RIVCLSVNQSDVMAALATKEQKWTLQNLLPGLVVKSQIQKVSPDGITLSFLSFMGTVDFL
HLDPKRSNGYQKDQMVKACIIYVHSETKVIGLTLRQSFLQPGNSLRQLSSERIGDVVEQC
PVKYFHKKSGALFELDGGVLAFAHLYNMPSKSKYLATFQKGCKRTGRIVDYSPMDEMALM
SLIQRVIETPYFRYQDIHPGQLIEGTVTSLRPIGILVKITDHMTGLVPSLHLADVRIKKP
ERKYSEGQTVKCRVLTVFPESKKLILTLKKTLVDSNLPIISNYSSAKPGMSTHGFISRVK
DFGCLVQFYNDVRGLVPKSELSTEPVPFPEKVFYEGQVVKVTVLNTEPEKERMKLSLKLT
AGSVQEDLEQSPEMKERALKCEIGKMVDVTVVRKTDTGLEVSVVPEDVPAFLPTMHLSDH
VTNCKLLWRWLQKGDFLTGLMCLSNVQGQITVCRKPSLISSYEEGNIVKDFSDIQTGMLM
TGYIRNIMSYGVFVEFPHGLCGLAPKSAMCDKFVTNTEDHFVVGQTVVAKVTNIEEEKKR
ILLNLKVSECSSGDSAGESFSLLNQCFQELHFMRTFLSSRDSSEVSQNLAKLLPGQKLTL
TVQDVNDDGLAHFSGGDATAGMTVSASPFHVGEVSLVPGQKATAVVLYVDGLQFNVHVSL
RPELINRKEKKFHENYSTSAVVQHVAEEFAVVSLVETGQLAAVPVASHLNDTFRFDSEKL
TVGETISLVLKSVTASDHGVLLALQGPVTSRANKKQWKKSGTLAEPPLVGKHSLSFGDTV
TGTVKSVKPNTVVVSICDKLVGFIHASHIFDEVPIGSFPTSKLRAKQTVAAKDEMVKTSL
GVYIYAEKMFLICNWLTQKCVIYQVGVPKKKKKKSHVPKEEDDSGVEVFFREQDEEETKE
EKSKPKKHTQDTAPRLQISSDFTWDVSLNTLKVAQPDKREADSSDSDEDEAKQSKLKKKT
KKDKEIEKQQAEKELSKIESTLMDPTRHPQTADDFDRLVLSSPNSSILWLQYMAFHLHAT
EIEKARAVAERALKTISFREEQEKLNVWVAFLNLENLYGTEETLMKVFDRAVQYNEPLKV
FMQLGDIYTKAEKFKQADVLYNTMLKRFRKEKSVWLKYATYLFKQGQKDEAHRLLQRALK
CLPDKEHVDVISKFAQLEFHLGDVERAKSIFESTLSNYPKRTDLWSVYIDMMIKHGHQKE
VRNIFERVIHLSLAAKKMKFFFKRYLDYEKKHGSPESVQAVKEKALEYVESKQSLSEI
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccaagtgtttccgggttagcgtgcatgtggatgtttttggttgtcctgatgca
agttttattaacagtcccaacagctcgtccctgaggaacaaccagagcaaaaacagaaac
ttttggagcatggaattgtttgaggaaagctttccccgaggaggcgcacagaagaagccc
aaggaaacagaaacaaacaaaaggcctgtagatcgtgataacttgtttaatacccatgat
gaagaagacacagctgcgaaacgaaagaggggcaaaggagattctgcaaagtcagatcag
ctgaaatcaaaaaagccaaagacagagagaactgaattttccacctccaaacatgaaaaa
tgcatcgagattctcaaatttaataacttaagcacggggctgttactgctcggctgtgtg
aaggaggccaccgattttgagctaattgtcagtttgccacatgggctcactggctttgta
caggtcactaacatctgtgaagcttacacaaaacttctaagcaagcaagtggagacggag
gagctctctgtggatctggcaccattatcggagctcttcacacctgggatgttagtcaga
tgttcagttagcagtttggagacaaccaaaggagggttccacagtctgaaactttctctg
aaccccaaagatgtcaacaaagcactcagtcctggaaccttgatgccaggcatgctgctc
tcaggatgcgtatccagtgttgaagatcatggctacctgatagacattggagttggagga
aataaagcctttctacctcgccagaaggctcaaaactacattaaacagtcaaacaaagga
agtgagctgaaaataggacagtatctgaattgtctgatagaagaagtaaaggaccatggg
aggattgtctgtctgtcagtcaaccagtcagatgtgatggcagctctagcaaccaaagaa
cagaagtggactctgcagaacctattgccagggctggttgtcaaaagccaaatccaaaag
gtctcccctgatggaataactctatccttcctttctttcatgggaactgttgactttctg
catttagatccgaaaagatccaatggatatcagaaagatcaaatggtaaaagcatgcatt
atttacgtccactcggagaccaaggtcattggattgaccctacggcagtcattcctgcaa
cctgggaactctttgcgacaactttctagtgaacgaattggtgatgtggtggagcagtgt
ccagtgaaatacttccacaagaaatctggggccctttttgagttggatggtggcgttttg
gcattcgctcatttgtataatatgccaagtaaatccaaatacctggctacatttcaaaaa
ggctgcaaacgtactgggagaattgtggattacagtccaatggatgagatggctttgatg
tcactgattcagcgcgttattgaaacaccatattttagatatcaagacattcatcctggt
cagctcattgaaggcacagtgacctctctacggccaattgggatccttgtaaagatcact
gatcacatgactggtttggttccttccctgcaccttgcagatgtgaggataaaaaagcca
gagagaaagtacagcgaggggcaaactgtcaagtgccgggttctgacagtttttccagaa
tcaaaaaagcttattctgactttgaagaaaactctggtagactccaacttgcccattatc
tcaaactacagcagtgcaaaacctggcatgagcacgcatgggttcatttcacgcgtgaaa
gattttggctgcttggtgcagttctacaatgacgtgcgaggtcttgttcctaaaagtgaa
cttagcactgagccagtgcccttcccagaaaaggtcttctacgagggtcaggttgtcaaa
gtaacagtgttaaacacagaacctgaaaaggagcgaatgaaactgtccctgaagctgacg
gcaggatcagttcaagaagatttagaacaaagcccagagatgaaggagcgtgcactgaaa
tgtgaaattggcaagatggttgatgtgacagttgtcagaaaaacagacactggccttgaa
gtctctgtagtgccagaggatgttcctgcgttccttcccacaatgcacctttccgaccat
gtcaccaactgcaaattactctggcgttggctgcagaagggggatttcctcactggcttg
atgtgcttaagtaatgtgcaaggacagattaccgtgtgcaggaaaccttctttgatatct
tcatatgaggaaggaaatattgtgaaggacttctctgatatccaaacaggaatgctaatg
actggttacatacggaacatcatgtcctatggtgtctttgtggagttcccacatggtctc
tgtggattggcaccaaaatctgccatgtgcgataagtttgttacaaacacagaagaccac
tttgttgtagggcaaactgtggttgcgaaggtaacaaacattgaagaagaaaagaagcgt
atcctgctgaacctgaaggtttctgagtgcagttcaggtgacagtgctggagagagtttc
tccttactcaaccagtgtttccaggaactacattttatgaggacatttttgagcagcaga
gatagttctgaggtgagccagaatttggctaaattgttacctggtcagaaactcacactc
acagtccaggatgtgaatgatgatggattggcacattttagcggtggggacgccactgct
ggaatgacagtgtctgcaagcccattccatgttggagaagtcagccttgtccctggtcag
aaagcaacagcagtggttctgtatgtggatggcctgcagttcaatgttcacgtttccctt
cggcctgaacttatcaacaggaaagaaaagaagtttcatgaaaattactccacgtcagca
gttgtacaacatgttgcagaagagtttgcagtggtctccttagttgaaacaggccagctc
gctgctgtccctgtggcttcccatttgaatgacaccttccgctttgattcagaaaaactg
acagttggagaaaccatctccctcgtactaaaatcagtgaccgccagtgatcatggagtt
ctcttagcattgcaaggccctgtgacttcacgggctaataagaaacaatggaagaaatcg
ggcaccctggcagagccacctttagtaggaaagcacagcctgtcctttggtgacacagtc
actggaactgtaaaatctgtgaaaccaaacactgtggttgtttccatttgtgataaactt
gtgggttttatccatgcatcccatatattcgatgaagtcccaattggttcttttcccacg
tccaaactgagagcgaagcaaacagttgctgctaaagatgagatggtaaagacttcttta
ggcgtttacatctatgcagaaaaaatgttcttgatttgtaactggttgactcaaaaatgt
gtaatttaccaggttggtgttccaaagaaaaagaaaaaaaagtcacatgtgcccaaagaa
gaggacgacagtggagttgaggtgttcttccgagagcaagacgaggaagaaacaaaagag
gagaaatcaaagccaaaaaagcatacacaggatacggctccgaggctgcagatttcttcc
gacttcacctgggacgtcagtttgaacactttaaaggtcgcccagccagacaaaagagaa
gcagatagctcagacagcgacgaggatgaagcaaaacaatccaagctaaagaaaaaaaca
aagaaggataaggaaattgagaagcaacaagcagagaaggagctttctaaaattgaatct
acccttatggatcccacgcgccatccacagactgctgatgattttgaccgcttggtcctt
agctctcccaacagctccatcctctggttgcagtatatggcgttccaccttcatgccaca
gagattgaaaaggctagagctgtagcagaaagggcactcaagacaatatctttcagggag
gagcaggagaaactaaatgtatgggttgccttcctgaacctggagaacctgtatggaaca
gaagagacactcatgaaggtctttgatcgggctgtccagtataatgagcctctaaaggtt
ttcatgcaacttggcgatatctacactaaggcggagaaattcaagcaagcggatgtgtta
tacaacactatgctgaagcgcttccggaaagagaagtctgtttggctgaagtatgctaca
tacctcttcaaacagggacagaaggatgaagcacacagactgctgcagcgtgccctcaag
tgtctgccagataaagagcatgttgatgtaatttcaaagtttgctcaactggaattccac
ttgggtgatgtggaacgtgccaagtccatttttgagagcacacttagcaactatcctaaa
cggactgatctgtggtccgtgtacatcgatatgatgatcaagcatgggcaccaaaaggaa
gtgaggaacatttttgagcgtgtcattcacctaagtctggcagccaagaagatgaaattc
ttctttaagcgatatctggattatgaaaagaaacatggcagcccagaaagcgtgcaagct
gtgaaggaaaaggctctggagtatgtggaatcgaagcaatccctcagcgaaatttaa
DBGET
integrated database retrieval system
