Pleurodeles waltl (Iberian ribbed newt): 138303775
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Entry
138303775 CDS
T10800
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl04510
Focal adhesion
pwl04512
ECM-receptor interaction
pwl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138303775 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138303775 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138303775 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pwl00535
]
138303775 (COL9A3)
Proteoglycans [BR:
pwl00535
]
Extracellular matrix (ECM) proteoglycans
Others
138303775 (COL9A3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138303775
NCBI-ProteinID:
XP_069099278
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Position
7:complement(103999292..104203816)
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AA seq
679 aa
AA seq
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MAGAATFGILLLLHLFATAPAQQRAGPRGPPGAEGPPGTPGKDGIDGEPGPPGLPGAPGP
KGAAGKPGLPGQPGLSGLPGIDGLTGPDGKPGPAGLPGKRGDAGPPGPEGPAGRGPPGPA
GKAGVSGLPGGNGLQGPPGPGGPPGLAGPPGPPGPPGLPGVLPDGTGDLQCPAICPPGPP
GPPGMPGFKGHTGHKGEQGEVGKDGQKGDPGPPGPAGIPGSVGLQGPRGLRGLIGPQGAA
GDRGPNGFRGPPGRPGPPGKAGDQGEKGPTGYLGPKGDLGKPGPKGITGPGGPIGEPGMP
GHDGRDGTPGIDGEKGDAGRMGVSGEKGPNGLPGLPGKAGAKGAKGQLGKHGEQGEAGPS
GEPGIPGESGVPGERGEAGPRGSAGGVGLQGPIGVPGIRGYQGPKGSIGDPGLPGPTGIR
GGFGERGPTGVSGPKGSQGMAGADGLPGDKGELGPSGPVGQKGEAGNRGESGPKGIPGPN
GTAGVPGIPGRPGPMGFQGEQGVPGITGKTGIPGKLASEQHIRELCGGMINDQMAQLAAN
LRRPLAPGSVGRPGPPGSPGPQGPLGSIGHPGARGPPGYRGPTGELGDPGTRGDQGDKGD
KGPVGKGIDGPDGDQGYAGLQGVPGTSRDGRDGAHGEPGFPGDPGTPGAVGAQGTPGICD
TSACQGAVAAVKSGSPKKS
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcgacattcggaatactgctacttttacaccttttcgccactgcccca
gctcagcagagagcgggaccccgcggacctccgggcgctgaaggaccaccaggaaccccc
ggcaaggacggcatagacggagaacctggtcctcctggcctgcctggagctccgggacct
aaaggagcggcaggaaaaccgggtttgccaggacagccaggattatctggacttccagga
atagatggtttaactggcccagatggcaagcccggccccgctggactaccaggcaaacgg
ggagatgctggaccaccaggcccagaaggaccagcgggaaggggcccacccggaccagca
ggcaaagcaggagtcagtggtcttccaggcgggaatggattgcaaggtcctccgggacca
ggtggcccccctgggcttgcaggacctccaggcccccctggaccaccgggtcttccaggc
gtacttcctgatggcactggagatctgcagtgtccggcaatatgtcctcctggtccaccc
ggccctcctggaatgccaggctttaagggacacactggtcacaaaggagaacagggcgaa
gtcggaaaagatggtcaaaagggtgatcctggtcctccagggcctgctgggattccagga
agcgttggattacagggtccaagaggtttgagaggtctaattggtccacagggtgctgct
ggagacagaggtccaaatggcttccgagggccccctggacgtcctggaccaccaggcaaa
gctggggaccaaggagaaaaaggacccacaggctacctgggacccaaaggcgacctaggt
aagcctggtcccaagggaataactggtcccggtggccccattggagaaccaggcatgcct
gggcatgatggtcgcgatggcacacccggaatcgatggtgagaagggggatgccggccga
atgggtgtctctggcgaaaagggaccgaacggacttccagggttgcccgggaaagcagga
gcgaagggagctaaagggcagctgggcaaacacggagagcagggagaggccggtccttca
ggagagcctggtatccctggagagtctggtgttcctggagagcggggagaggccgggcca
cgtggttcagctggtggtgttggacttcaaggtccgattggtgttccaggaatccgtgga
tatcaggggccaaaaggcagtattggggaccctggtttgcctggaccaacgggaatccgt
ggtggatttggagaacggggtcccaccggagtttcaggtcccaaaggtagccagggcatg
gccggtgctgatggacttcctggagacaagggagagttgggtcccagtggtcctgttgga
caaaaaggagaggcaggaaacagaggagagtcaggccccaaaggcatcccaggacctaat
ggcacagcgggtgtacctgggattccaggtcgtccaggtccaatgggtttccaaggagag
caaggagttcctggcattactggaaaaacgggcatccctgggaaattggcaagtgaacaa
cacatccgtgagctctgtggagggatgataaacgatcaaatggcacagttggctgctaat
ttgagacgaccattggctcctggatcagttggtcgtcctggccctccaggctcacctggt
ccccaagggccacttggaagtattggtcacccgggggctcgtggtccacctggatacaga
ggaccaacaggagagcttggtgacccaggaacaagaggtgaccagggtgataagggagat
aaaggacctgtgggcaaaggcatcgatggaccagatggggatcaaggctatgctggactg
caaggcgttcctggaactagcagggatggtcgtgatggagctcatggcgagcctgggttc
ccaggtgatcctggtacacccggtgctgtcggtgctcaagggactccaggaatttgtgac
acatcagcatgccagggggctgttgcagcagtaaaatctgggagtcctaaaaaatcctaa
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