Pleurodeles waltl (Iberian ribbed newt): 138303809
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Entry
138303809 CDS
T10800
Symbol
PRPF6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
pwl Pleurodeles waltl (Iberian ribbed newt)
Pathway
pwl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pwl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138303809 (PRPF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pwl03041
]
138303809 (PRPF6)
Spliceosome [BR:
pwl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138303809 (PRPF6)
Complex C
U5 SnRNP specific factors
138303809 (PRPF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
TPR_8
TPR_CcmH_CycH
TPR_1
ARM_TT21_2nd
ARM_TT21_N
ARM_TT21_C
T7SS_EccA1_N
TPR_11
TPR_21
ChAPs
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
138303809
NCBI-ProteinID:
XP_069099341
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All DBs
Position
7:complement(122098638..122693415)
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AA seq
976 aa
AA seq
DB search
MASMSSSSGGPVAPGPGNPGVAAGGASGLTASLTGTMNKKKKPFLGMAAPLGYVPGLGRG
ATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQADDDDEDLNDTNYDEFNGYA
GSLFSSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDL
KRKLAEVTEEEWMSIPEVGDARNKRQRNPRYEKLTPIPDSFFAKALQTGENHTSVDPRQS
QFSGLNSPFPGGLNSPYPGGMTPGLMTPGSGELDMRKIGQARNTLMDMRLSQVSDSVSGQ
TVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKL
QVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETD
IRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTSVELWLALARLET
YENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQ
WIQDAEECDKAGSVVTCQAVIRDVIGIGIEEEDRKHTWMEDADSCVSHSALECARAIYAH
SLQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVP
AARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLE
WVLGNIDAAQDLCEEALKHYEDFPKLWMMKGQIEEQGQQMEKAREAYNQGLKKCPNSTPL
WLLLSRLEEKVGQLTRARAILEKSRLKNPKNAELWLESVRLEYRAGLKNIANTLMAKALQ
ECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFH
RTVKIDSDLGDAWAFFYKFELQHGTEEQQEDVRKRCENVEPRHGELWCAVSKDIENWQRK
IGEILILVASKIKNTF
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcctctatgtcttcctctagcggtggcccggtggccccgggccccgggaatccgggc
gtggccgccgggggagcctccgggttgactgcctcccttaccggcaccatgaacaaaaag
aagaagccctttctcggcatggcagcgccgctcggatacgtgcctggcctggggagaggt
gcgactggctttaccacacggtctgatattggtcctgctcgagatgctaatgaccctgtg
gatgatcgccatgctccacccgggaagaggactgttggtgaccagatgaagaaaaaccag
gcagacgatgatgatgaagatctcaatgacactaattatgatgagtttaatggctatgcc
ggcagtctgttctcgagtggaccgtatgaaaaggatgacgaagaagcagatgcgatatac
gcagccctggacaagcgaatggatgaaagaagaaaggagcgaagagagcagagggagaaa
gaggagattgagaaataccgtatggaacgaccgaaaatccagcagcagttttcggattta
aagaggaagctggctgaggtgactgaagaagagtggatgagtatcccagaggtcggtgat
gccaggaataagcgacagcgaaacccacgatatgaaaaactgacgcccatccctgacagc
ttctttgcaaaggccttacagactggagagaaccacacgtctgtggacccccgacagtcg
caattcagtgggctgaacagtccatttccagggggcctgaactcaccgtatcctgggggt
atgactccagggctgatgacgccgggctcaggcgagcttgacatgaggaagattgggcaa
gccaggaacaccctaatggatatgaggctgagtcaggtttctgattctgtgagcggccag
accgtggtggaccccaaagggtatcttaccgacttaaattcaatgatccccacacatgga
ggagacatcaatgacattaaaaaagcccgcttgctgctcaagtcagtacgtgaaacaaac
cctcatcatcctccagcttggattgcctccgctcgtttagaggaagtcactggaaaactt
caagtagccagaaacctaatcatgaagggaacagagatgtgtcccaagagtgaagatgtg
tggcttgaagctgcccgactgcaacccggtgacacagcgaaagcggtggtggctcaagcg
gtccgtcacttaccacagtctgtccggatctacattcgagcagcagagctggagactgac
atcagggccaaaaagcgggtgctccggaaagctctggagcatgtgccaaattctgtgcga
ctttggaaggctgctgtggagcttgaggagcctgaagatgcccggatcatgctgagcaga
gcagtagagtgctgtcccaccagtgtggagctgtggcttgcccttgctcgcctggagacc
tatgaaaacgcacgcaaagtgctgaacaaagcccgtgagaacattcccacggaccggcac
atttggatcactgctgccaagcttgaggaagccaacggaaacactcagatggtggagaag
atcattgacagagcgatcacgtccctgcgcgccaacggagtggagataaaccgtgaacag
tggatacaggacgccgaggagtgcgacaaagctggcagtgtagtgacgtgtcaggctgtt
atccgagacgtcatcggcattgggattgaggaggaggatcggaagcacacctggatggaa
gacgcagacagctgcgtttcccacagtgcccttgagtgtgctcgagccatctatgcccat
tccctgcaagtttttccaagcaagaaaagtgtgtggctgagagcagcatactttgagaag
aaccatggcaccagggaatccctggaggctcttctgcagagagctgtggctcactgcccc
aaagcagaggtcttgtggttgatgggagccaagtcgaaatggttggctggagatgtgcct
gccgccagaagcattctagctctggcctttcaggcaaacccgaacagtgaggagatttgg
ctggctgccgtgaaactggagtctgagaacaatgaatatgagagagccaggaggctgctg
gccaaagctcggagcagtgcaccaacagccagggtttttatgaagtcagtgaagttggag
tgggtgctggggaatattgatgctgctcaggatctatgcgaggaagcgttgaagcactat
gaggacttccccaagctctggatgatgaaggggcagattgaagagcagggccaacagatg
gagaaggctcgtgaggcctacaaccaagggctgaagaagtgccctaactccacccctctg
tggctgctactgtctaggttggaggagaaggttggccagctgacgagggctagagccatc
ttggagaagtctcggctaaagaacccaaaaaatgcagaactctggctggagtctgtgcga
ctggagtacagggctggcctgaagaacattgctaatactctgatggccaaagctctccag
gaatgtcctaattcagggattttgtggtctgaagctgtttttctggaggcacggccacaa
agaaaaacaaagagcgtggatgctttgaagaagtgcgagcacgatccccatgttctgctg
gccgttgccaagcttttctggagtgaacggaagatcactaaggctcgggaatggtttcat
cgcacagtgaagatcgattcagacctaggtgatgcctgggccttcttctacaagttcgag
ctgcagcatggcacagaggagcagcaggaggacgtgcgaaagcgatgtgagaatgtggag
ccccgccacggtgagctgtggtgtgccgtctccaaagacatcgaaaactggcagcggaag
attggcgaaatcctcatccttgtggccagcaagatcaaaaacaccttctga
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